Evidence map›Paper›PMID 40426027›Full record

ArticleGenetics, selection, evolution : GSE2025

Rumen metagenome profiles are heritable and rank the New Zealand national sheep flock for enteric methane emissions.

Timothy P Bilton, Setegn W Alemu, Ken G Dodds, Hannah Henry, Melanie K Hess, Ronan Jordan, Fern Booker, Sharon M Hickey, Neville Amyes, Kevin Knowler and 13 more

Abstract read
In one paragraph

Article in Genetics, selection, evolution : GSE, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Timothy P BiltonAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand. timothy.bilton@agresearch.co.nz.ORCID http://orcid.org/0000-0001-5945-3766
Setegn W AlemuAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Ken G DoddsAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Hannah HenryAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Melanie K HessAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Ronan JordanAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Fern BookerAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Sharon M HickeyAgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand.
Neville AmyesAgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand.
Kevin KnowlerAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Edgar SandovalAgResearch, Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand.
Jacqueline Peers-AdamsAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Tracey C van StijnAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Hayley BairdAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Trevor WatsonAgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand.
Wendy BainAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Barry VeenvlietAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Gerard PileAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Brooke BrysonAgResearch, Woodlands Research Farm, RD1, Woodlands, Invercargill, 9871, New Zealand.
Shannon M ClarkeAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Patricia L JohnsonAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
John C McEwanAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.
Suzanne J RoweAgResearch, Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.

Funding

Ministry of Business, Innovation and Employment C10X1807
6 · The paper itself

Abstract

backgroundGlobal targets to reduce greenhouse gas emissions to meet international climate change commitments have driven the livestock industry to develop solutions to reduce methane emission in ruminants while maintaining production. Research has shown that selective breeding for low methane emitting ruminants using genomic selection is one viable solution to meet methane targets at a national level. However, this requires obtaining sufficient measures of methane on individual animals across the national herd. In sheep, one affordable method for measuring methane on-farm to rank animals on their methane emissions is portable accumulation chambers (PAC), although this method is not without its challenges. An alternative is to use a proxy trait that is genetically correlated with PAC methane measures. One such trait that has shown promise is rumen metagenome community (RMC) profiles. In this study, we investigate the potential of using RMC profiles as a proxy trait for methane emissions from PAC using a large sheep dataset consisting of 4585 mixed-sex lambs from several flocks and years across New Zealand.

resultsRMC profiles were generated from rumen samples collected on the animals immediately after being measured through PAC using restriction enzyme-reduced representation sequencing. We predicted methane (CH

conclusionsRMC profiles are predictive of, and genetically correlated, with PAC methane measures. Therefore, RMC profiles are a suitable proxy trait for determining the genetic merit of an animal's methane emissions and could be incorporated into existing breeding programs to facilitate selective breeding for low methane emitting sheep.

Indexed as

MetagenomeMethaneRumenAnimalsCarbon DioxideFemaleMaleNew ZealandSheepCarbon DioxideMethane

Identifiers

PMID40426027
PMCPMC12117806

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.