Evidence map›Paper›PMID 40425539›Full record

ArticleNature communications2025

Topobexin targets the Topoisomerase II ATPase domain for beta isoform-selective inhibition and anthracycline cardioprotection.

Jan Kubeš, Galina Karabanovich, Anh T Q Cong, Iuliia Melnikova, Olga Lenčová, Petra Kollárová, Hana Bavlovič Piskáčková, Veronika Keresteš, Lenka Applová, Lise C M Arrouye and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. DNA topological regulation in RNA polymerase II transcription.Cellular & molecular biology letters · 2026
    Review
  10. Review
  11. Drug Repositioning in Doxorubicin-Induced Cardiotoxicity Protection.International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Jan Kubeš *Department of Biochemical Sciences, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.ORCID http://orcid.org/0000-0002-0513-4847
Galina Karabanovich *Department of Organic and Bioorganic Chemistry, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Anh T Q Cong *Department of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, 55905, MN, USA.ORCID http://orcid.org/0000-0001-9307-7741
Iuliia MelnikovaDepartment of Organic and Bioorganic Chemistry, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Olga LenčováDepartment of Pharmacology, Faculty of Medicine in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Petra KollárováDepartment of Pharmacology, Faculty of Medicine in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.ORCID http://orcid.org/0000-0001-9673-9210
Hana Bavlovič PiskáčkováDepartment of Pharmaceutical Chemistry and Pharmaceutical Analysis, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.ORCID http://orcid.org/0000-0002-9817-7247
Veronika KerestešDepartment of Biochemical Sciences, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Lenka ApplováDepartment of Biochemical Sciences, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Lise C M ArrouyeDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, 55905, MN, USA.
Julia R AlveyDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, 55905, MN, USA.ORCID http://orcid.org/0000-0001-6549-9816
Jasmina PaluncicDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, 55905, MN, USA.ORCID http://orcid.org/0000-0003-3420-1532
Taylor L WitterDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, 55905, MN, USA.ORCID http://orcid.org/0000-0003-3096-3011
Anna JirkovskáDepartment of Biochemical Sciences, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Jiří KunešDepartment of Organic and Bioorganic Chemistry, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Petra Štěrbová-KovaříkováDepartment of Pharmaceutical Chemistry and Pharmaceutical Analysis, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic.
Caroline A AustinBiosciences Institute, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK. caroline.austin@newcastle.ac.uk.ORCID http://orcid.org/0000-0002-1921-5947
Martin ŠtěrbaDepartment of Pharmacology, Faculty of Medicine in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic. sterbam@lfhk.cuni.cz.
Tomáš ŠimůnekDepartment of Biochemical Sciences, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic. simunekt@faf.cuni.cz.
Jaroslav RohDepartment of Organic and Bioorganic Chemistry, Faculty of Pharmacy in Hradec Králové, Charles University; Hradec, Králové, 500 03, Czech Republic. rohj@faf.cuni.cz.
Matthew J SchellenbergDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, 55905, MN, USA. schellenberg.matthew@mayo.edu.ORCID http://orcid.org/0000-0001-7036-5943

Funding

Women's Cancer ProgramP30CA015083 · NCI · MAYO CLINIC ROCHESTER · PI Lila J. Rutten · 1985 to 2026
$151.3M
User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
MSTP at Mayo Clinic RochesterT32GM145408 · NIGMS · MAYO CLINIC ROCHESTER · PI SCOTT H KAUFMANN, LISA A SCHIMMENTI · 2023 to 2026
$4.7M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Mayo Clinic startup fundsNCI NIH HHS P30 CA015083NIGMS NIH HHS P30 GM124165NIGMS NIH HHS T32 GM145408NIH HHS S10 OD021527
6 · The paper itself

Abstract

Topoisomerase II alpha and beta (TOP2A and TOP2B) isoenzymes perform essential and non-redundant cellular functions. Anthracyclines induce their potent anti-cancer effects primarily via TOP2A, but at the same time they induce a dose limiting cardiotoxicity through TOP2B. Here we describe the development of the obex class of TOP2 inhibitors that bind to a previously unidentified druggable pocket in the TOP2 ATPase domain to act as allosteric catalytic inhibitors by locking the ATPase domain conformation with the capability of isoform-selective inhibition. Through rational drug design we have developed topobexin, which interacts with residues that differ between TOP2A and TOP2B to provide inhibition that is both selective for TOP2B and superior to dexrazoxane. Topobexin is a potent protectant against chronic anthracycline cardiotoxicity in an animal model. This demonstration of TOP2 isoform-specific inhibition underscores the broader potential to improve drug specificity and minimize adverse effects in various medical treatments.

Indexed as

AnthracyclinesCardiotonic AgentsCardiotoxicityDNA Topoisomerases, Type IITopoisomerase II InhibitorsAnimalsHumansMicePoly-ADP-Ribose Binding ProteinsAnthracyclinesCardiotonic AgentsDNA Topoisomerases, Type IIPoly-ADP-Ribose Binding ProteinsTOP2A protein, humanTOP2B protein, humanTopoisomerase II Inhibitors

Identifiers

PMID40425539
PMCPMC12116762

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.