Evidence map›Paper›PMID 40424442›Full record

ArticlePloS one2025

Targeted analysis of dyslexia-associated regions on chromosomes 6, 12 and 15 in large multigenerational cohorts.

Nicola H Chapman, Patrick A Navas, Michael O Dorschner, Michele Mehaffey, Karen G Wigg, Kaitlyn M Price, Oxana Y Naumova, Elizabeth N Kerr, Sharon L Guger, Maureen W Lovett and 5 more

Abstract read
In one paragraph

Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Nicola H ChapmanDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, United States of America.
Patrick A NavasDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, United States of America.
Michael O DorschnerDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, United States of America.
Michele MehaffeyDepartment of Pediatrics, Division of Pediatric Genetics, Pediatric Genetics, University of Washington, Seattle, Washington, United States of America.
Karen G WiggProgram in Neuroscience and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Kaitlyn M PriceProgram in Neuroscience and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Oxana Y NaumovaDepartment of Psychology, University of Houston, Houston, Texas, United States of America.
Elizabeth N KerrDepartment of Psychology, Hospital for Sick Children, Toronto, Ontario, Canada.
Sharon L GugerDepartment of Psychology, Hospital for Sick Children, Toronto, Ontario, Canada.
Maureen W LovettProgram in Neuroscience and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Elena L GrigorenkoDepartment of Psychology, University of Houston, Houston, Texas, United States of America.
Virginia BerningerDepartment of Educational Psychology, University of Washington, Seattle, Washington, United States of America.
Cathy L BarrProgram in Neuroscience and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada.
Ellen M WijsmanDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, United States of America.ORCID https://orcid.org/0000-0002-2725-6669
Wendy H RaskindDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington, United States of America.ORCID https://orcid.org/0000-0001-8141-9054

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dyslexia is a common learning impairment with a genetic basis that affects word reading and spelling. An increasing list of loci and genes have been implicated, but analyses to-date have investigated only limited genomic variation within each locus with no confirmed pathogenic variants identified. Our study is the first to comprehensively sequence both coding and cis-acting regulatory regions of such genes in a large study sample. In a collection of >2000 participants in families from three independent sites, we performed targeted capture and comprehensive sequencing of all exons and some regulatory elements of five candidate risk genes (DNAAF4, CYP19A1, DCDC2, KIAA0319 and GRIN2B) for which prior evidence for a role in dyslexia exists from more than one sample. We evaluated evidence for association in each of six dyslexia-related quantitative phenotypes (traits) using both individual common single nucleotide polymorphisms and aggregated rare variants. We detected no promoter alterations and few deleterious variants in the coding exons, none of which showed evidence of association with any trait. Single variant and aggregate testing of DNAAF4 failed to detect significant evidence of association with any of the traits. The other four genes provided evidence of association with one or more traits. A common variant downstream of CYP19A1 showed significant evidence of association with multiple traits with or without verbal IQ (VIQ) adjustment. A haplotype that stretches from the downstream region of KIAA0319 to the second intron of DCDC2 was associated with reduced performance on timed real word reading. Finally, rare exonic variants in GRIN2B were associated with performance on spelling, with or without adjustment for VIQ. Our findings from this large-scale sequencing study complement those from genome-wide association studies, argue against the causative involvement of large-effect coding variants in these five candidate genes, support a multigenic etiology, and suggest a role of transcriptional regulation.

Indexed as

Chromosomes, Human, Pair 15Chromosomes, Human, Pair 6DyslexiaCohort StudiesCytoskeletal ProteinsExonsFemaleGenetic Predisposition to DiseaseHumansMaleMicrotubule-Associated ProteinsNerve Tissue ProteinsPolymorphism, Single NucleotideReceptors, N-Methyl-D-AspartateCytoskeletal ProteinsDCDC2 protein, humanDNAAF4 protein, humanKIAA0319 protein, humanMicrotubule-Associated ProteinsNerve Tissue ProteinsNR2B NMDA receptorReceptors, N-Methyl-D-Aspartate

Identifiers

PMID40424442
PMCPMC12112411

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.