Evidence map›Paper›PMID 40423871›Full record

ReviewWIREs mechanisms of disease

Harnessing Noncanonical Proteins for Next-Generation Drug Discovery and Diagnosis.

Nachiket Rajinikanth, Ruchi Chauhan, Sudhakaran Prabakaran

Abstract readReview
In one paragraph

Review in WIREs mechanisms of disease. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Mitochondrial function meets oncology: the multifaceted role of TFAM across cancer types.Apoptosis : an international journal on programmed cell death · 2026
    Review
  5. Review
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nachiket RajinikanthUniversity of Missouri Kansas City School of Medicine, Kansas City, Missouri, USA.ORCID https://orcid.org/0009-0007-7476-0589
Ruchi ChauhanNonExomics, Inc., Acton, Massachusetts, USA.
Sudhakaran PrabakaranNonExomics, Inc., Acton, Massachusetts, USA.ORCID https://orcid.org/0000-0002-6527-1085

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Noncanonical proteins, encoded by previously overlooked genomic regions (part of the "dark genome"), are emerging as crucial players in human health and disease, expanding our understanding of the "dark proteome." This review explores their landscape, including proteins derived from long non-coding RNAs, circular RNAs, and alternative open reading frames. Recent advances in ribosome profiling, mass spectrometry, and proteogenomics have unveiled their involvement in critical cellular processes. We examine their roles in cancer, neurological disorders, cardiovascular diseases, and infectious diseases, highlighting their potential as novel biomarkers and therapeutic targets. The review addresses challenges in identifying and characterizing these proteins, particularly recently evolved ones, and discusses implications for drug discovery, including cancer immunotherapy and neoantigen sources. By synthesizing recent findings, we underscore the significance of noncanonical proteins in expanding our understanding of the human genome and proteome, and their promise in developing innovative diagnostic tools and targeted therapies. This overview aims to stimulate further research into this unexplored biological space, potentially revolutionizing approaches to disease treatment and personalized medicine.

Indexed as

Drug DiscoveryProteinsProteomeAnimalsBiomarkersHumansNeoplasmsPrecision MedicineProteomicsRNA, CircularRNA, Long NoncodingBiomarkersProteinsProteomeRNA, CircularRNA, Long Noncodingalternative open reading framesdark genomedark proteomeneoantigensnoncanonical proteinsnovel cancer biomarkersnovel drug discoverynovel psychiatry biomarkersproteogenomicsribosome profiling

Identifiers

PMID40423871
PMCPMC12109379

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.