Evidence map›Paper›PMID 40421686›Full record

ArticleActa crystallographica. Section D, Structural biology2025

Myricetin-bound crystal structure of the SARS-CoV-2 helicase NSP13 facilitates the discovery of novel natural inhibitors.

Patrick Kloskowski, Piotr Neumann, Priya Kumar, Annette Berndt, Matthias Dobbelstein, Ralf Ficner

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. SARS-CoV-2 NSP8-Derived Peptide Effectively Suppresses the Activity of Helicase NSP13.Computational and structural biotechnology journal · 2026
    Article
  3. Article
  4. Article
  5. Nucleotide-bound crystal structures of the SARS-CoV-2 helicase NSP13.Acta crystallographica. Section F, Structural biology communications · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Patrick KloskowskiDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Göttingen Center of Molecular Biosciences (GZMB), University of Göttingen, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.ORCID 0009-0007-7077-0747
Piotr NeumannDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Göttingen Center of Molecular Biosciences (GZMB), University of Göttingen, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
Priya KumarDepartment of Molecular Oncology, Göttingen Center of Molecular Biosciences (GZMB), University Medical Center Göttingen, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.ORCID 0009-0008-0060-1224
Annette BerndtDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Göttingen Center of Molecular Biosciences (GZMB), University of Göttingen, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
Matthias DobbelsteinDepartment of Molecular Oncology, Göttingen Center of Molecular Biosciences (GZMB), University Medical Center Göttingen, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
Ralf FicnerDepartment of Molecular Structural Biology, Institute of Microbiology and Genetics, Göttingen Center of Molecular Biosciences (GZMB), University of Göttingen, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.ORCID 0000-0002-1739-6086

Funding

Deutsche Forschungsgemeinschaft 2067/1-39072994Deutsche Forschungsgemeinschaft INST186/ 111Niedersächsisches Ministerium für Wissenschaft und Kultur 14-76403-184).<
6 · The paper itself

Abstract

The SARS-CoV-2 helicase NSP13 is a highly conserved and essential component of the viral replication machinery, making it a promising target for antiviral drug development. Here, we present the 2 Å resolution crystal structure of NSP13 bound to the natural flavonoid myricetin, revealing a conserved allosteric binding site. Guided by these structural findings, a virtual screening campaign identified the caffeic acid derivatives rosmarinic acid and chlorogenic acid as potential novel natural inhibitors, which were experimentally validated to inhibit RNA-unwinding activity. This study provides structural insights that could support ongoing drug-discovery efforts targeting NSP13 in SARS-CoV-2 and other coronaviruses with pandemic potential.

Indexed as

Antiviral AgentsFlavonoidsRNA HelicasesSARS-CoV-2Viral Nonstructural ProteinsAllosteric SiteBinding SitesChlorogenic AcidCinnamatesCrystallography, X-RayDepsidesDrug DiscoveryHumansMethyltransferasesModels, MolecularProtein BindingAntiviral AgentsChlorogenic AcidCinnamatesDepsidesFlavonoidsMethyltransferasesmyricetinNsp13 protein, SARS-CoVRNA HelicasesRosmarinic AcidViral Nonstructural Proteinsantiviral drug developmentcaffeic acid derivativesmyricetinnatural inhibitorsNSP13 helicaseSARS-CoV-2virtual screening

Identifiers

PMID40421686
PMCPMC12128885

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.