Evidence map›Paper›PMID 40419487›Full record

ArticleNature communications2025

An engineered U7 small nuclear RNA scaffold greatly increases ADAR-mediated programmable RNA base editing.

Susan M Byrne, Stephen M Burleigh, Robert Fragoza, Yue Jiang, Yiannis Savva, Ricky Pabon, Evan Kania, Joseph Rainaldi, Andrew Portell, Prashant Mali and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
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  7. Article
  8. Review
  9. Article
  10. Review
  11. Emerging clinical applications of ADAR based RNA editing.Stem cells translational medicine · 2025
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Susan M ByrneShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0001-9628-6987
Stephen M BurleighShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.
Robert FragozaShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.
Yue JiangShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.
Yiannis SavvaShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.
Ricky PabonShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.
Evan KaniaShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA.ORCID http://orcid.org/0000-0002-0266-6610
Joseph RainaldiUniversity of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0003-4123-0008
Andrew PortellUniversity of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-0757-909X
Prashant MaliUniversity of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-3383-1287
Adrian W BriggsShape Therapeutics, 700 Dexter Avenue North, Seattle, WA, 98109, USA. adrian@shapetx.com.ORCID http://orcid.org/0009-0001-1644-658X

Funding

UC San Diego Genetics Training ProgramT32GM145427 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRUCE A HAMILTON · 2022 to 2026
$2.6M
NIGMS NIH HHS T32 GM145427
6 · The paper itself

Abstract

Custom RNA base editing exploiting the human Adenosine Deaminase Acting on RNA (ADAR) enzyme may enable therapeutic gene editing without DNA damage or use of foreign proteins. ADAR's adenosine-to-inosine (effectively A-to-G) deamination activity can be targeted to transcripts using an antisense guide RNA (gRNA), but efficacy is challenged by limits of in vivo delivery. Embedding gRNAs into a U7 small nuclear RNA (snRNA) framework greatly enhances RNA editing with endogenous ADAR, and a 750-plex single-cell mutagenesis screen further improved the framework. An optimized scaffold with a stronger synthetic U7 promoter enables 76% RNA editing in vitro from a single DNA construct per cell, and 75% editing in a Hurler syndrome mouse brain after one systemic AAV injection, surpassing circular gRNA approaches. The technology also improves published DMD exon-skipping designs 25-fold in differentiated myoblasts. Our engineered U7 framework represents a universal scaffold for ADAR-based RNA editing and other antisense RNA therapies.

Indexed as

Adenosine DeaminaseGene EditingRNA-Binding ProteinsRNA EditingRNA, Small NuclearAnimalsHEK293 CellsHumansMiceRNA, Guide, CRISPR-Cas SystemsADAR protein, humanAdenosine DeaminaseRNA-Binding ProteinsRNA, Guide, CRISPR-Cas SystemsRNA, Small Nuclear

Identifiers

PMID40419487
PMCPMC12106830

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.