Evidence map›Paper›PMID 40418703›Full record

ArticleAmerican journal of clinical pathology2025

Rapid clinical deployment of UBA1 testing in patients with VEXAS syndrome.

Paul A Wadsworth, Simon B Chen, Lauren Lawrence, Chandler C Ho, Joseph E Le, Paolo Libiran, Peter C Grayson, Marcela A Ferrada, David B Beck, Carlos J Suarez

Abstract read
In one paragraph

Article in American journal of clinical pathology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Paul A WadsworthDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, United States.ORCID 0000-0002-4562-7830
Simon B ChenDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, United States.
Lauren LawrenceDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, United States.
Chandler C HoMolecular Genetic Pathology Laboratory, Stanford Health Care, Stanford, CA, United States.ORCID 0009-0006-0035-058X
Joseph E LeMolecular Genetic Pathology Laboratory, Stanford Health Care, Stanford, CA, United States.
Paolo LibiranMolecular Genetic Pathology Laboratory, Stanford Health Care, Stanford, CA, United States.
Peter C GraysonSystemic Autoimmunity Branch, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, United States.
Marcela A FerradaDepartment of Medicine, Division of Immunology and Rheumatology, University of Maryland, Baltimore, MD, United States.ORCID 0000-0003-3256-3273
David B BeckDepartment of Medicine, New York University, New York, NY, United States.
Carlos J SuarezDepartment of Pathology, Stanford University School of Medicine, Stanford, CA, United States.ORCID 0000-0002-4531-9723

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveVEXAS (vacuoles, E1 enzyme, X-linked, autoinflammatory, somatic) is a recently described autoinflammatory syndrome caused by pathogenic variants in UBA1. However, there is a dearth of widely available UBA1 testing aside from large, expensive sequencing studies. Thus, we sought to rapidly develop, validate, and clinically deploy a cost-effective assay for detecting the most common UBA1 variants.

methodsWe developed, validated, and implemented a single base extension mass spectrometry assay for detecting pathogenic UBA1 variants at the c.121, c.122, and c.118-1 positions in patients with suspected VEXAS syndrome. Assay performance characteristics were assessed using peripheral blood and bone marrow samples from patients with (n = 8) and without (n = 36) VEXAS.

resultsThe assay demonstrated a lower limit of detection (LOD) of 10% variant allele fraction for each mutation. The analytical accuracy, sensitivity, and specificity were each demonstrated to be 100% at the LOD, with excellent intra- and interrun reproducibility. Based on literature review of reported UBA1 variants associated with VEXAS, to date, this assay detects the most prevalent variants, with a clinical sensitivity of 97% or more.

conclusionsA cost-effective, mass spectrometry-based assay with high analytical and clinical performance can feasibly be implemented in hospital laboratories for diagnosis of VEXAS syndrome.

Indexed as

Ubiquitin-Activating EnzymesFemaleHumansMaleMutationMyelodysplastic SyndromesReproducibility of ResultsSensitivity and SpecificitySkin Diseases, GeneticUBA1 protein, humanUbiquitin-Activating EnzymesautoinflammatoryE1 enzymesomaticUBA1 variantsvacuolesVEXAS syndromeX-linked

Identifiers

PMID40418703
PMCPMC13016694

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.