Evidence map›Paper›PMID 40417826›Full record

ArticleGenome biology and evolution2025

Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric Phototransduction in Xenacoelomorpha.

Samuel Abalde, Ulf Jondelius

Abstract read
In one paragraph

Article in Genome biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Samuel AbaldeDepartment of Zoology, Swedish Museum of Natural History, Stockholm, Sweden.ORCID 0000-0001-7790-0603
Ulf JondeliusDepartment of Zoology, Swedish Museum of Natural History, Stockholm, Sweden.ORCID 0000-0003-2847-2192

Funding

Knut and Alice Wallenberg FoundationNational Genomics Infrastructure in StockholmScience for Life LaboratorySwedish Research CouncilUPPMAX computational infrastructure NAISS 2023/22-853UPPMAX computational infrastructure SNIC 2020/15-191UPPMAX computational infrastructure SNIC 2021/22-562UPPMAX computational infrastructure SNIC 2022/22-758
6 · The paper itself

Abstract

Animals use opsins, light-sensing, transmembrane proteins, to detect light, which is then converted into an electrical stimulus in the photoreceptors through a process known as phototransduction. The steady generation of genomic data has facilitated the description of the opsin diversity and photoreceptor activity in different animals. However, Xenacoelomorpha still represents an important gap in our understanding of opsin evolution from early animals. Characterized by extreme morphological simplicity, some Xenacoelomorpha present ocelli, eyespots, and even eyes with lenses, but no ciliary or rhabdomeric photoreceptors have been described. Here, we have leveraged all available genomic data from this group to characterize their opsin repertoire and to annotate the genes involved in the two main phototransduction cascades, ciliary and rhabdomeric, in these worms. Only six opsin types were found in Xenacoelomorpha, with no more than three in any given species. Among them, we annotated Anthozoa I, insofar thought to be cnidarian-specific, and another one specific to xenacoelomorphs. Despite their enigmatic position in the animal tree, we extended these findings to other animals, evaluating the two main phylogenetic hypotheses-the Nephrozoa and Xenambulacraria hypotheses. We propose that the opsin repertoire of the ancestral bilaterian was composed of either seven opsins or 11, depending on the phylogenetic hypothesis, and not nine as previously suggested. We argue that the Nephrozoa hypothesis explains opsin evolution more parsimoniously than the alternative Xenambulacraria hypothesis. Furthermore, our data also suggest that despite the lack of the typical rhabdomeric or ciliary photoreceptors, xenacoelomorphs use rhabdomeric phototransduction.

Indexed as

AnthozoaEvolution, MolecularLight Signal TransductionOpsinsAnimalsGenomicsPhylogenyOpsinsBilateriaNephrozoaopsinsphotoreceptionphototransductionXenacoelomorpha

Identifiers

PMID40417826
PMCPMC12104807

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.