Evidence map›Paper›PMID 40417558›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2024

Neural Mosaics: Detecting Aberrant Brain Interactions using Algebraic Topology and Generative Artificial Intelligence.

Katrina Prantzalos, Dipak Upadhyaya, Pedram Golnari, Guadalupe Fernandez-BacaVaca, Geronimo Pacheco Aispuro, Saeideh Salehizadeh, Suraj Thyagaraj, Nick Gurski, Kenneth Yoshimoto, Subhashini Sivagnanam and 2 more

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Katrina PrantzalosDepartment of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Dipak UpadhyayaDepartment of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Pedram GolnariDepartment of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Guadalupe Fernandez-BacaVacaDepartment of Neurology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA.
Geronimo Pacheco AispuroDepartment of Neurology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA.
Saeideh SalehizadehDepartment of Neurology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA.
Suraj ThyagarajDepartment of Neurology, University Hospitals Cleveland Medical Center, Cleveland, OH, USA.
Nick GurskiDepartment of Mathematics, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Kenneth YoshimotoSan Diego Supercomputer Center, University of California, San Diego, CA, USA.
Subhashini SivagnanamSan Diego Supercomputer Center, University of California, San Diego, CA, USA.
Amitava MajumdarSan Diego Supercomputer Center, University of California, San Diego, CA, USA.
Satya S SahooDepartment of Population and Quantitative Health Sciences, Case Western Reserve University School of Medicine, Cleveland, OH, USA.

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR002548 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI MCCOMSEY, GRACE A · 2018 to 2022
$35.5M
Neuroscience Gateway to Enable Dissemination of Computational And Data Processing Tools And Software.U24EB029005 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MAJUMDAR, AMITAVA · 2019 to 2023
$2.2M
CRCNS:NeuroBridge: Connecting Big Data for Reproducible Clinical NeuroscienceR01DA053028 · NIDA · OHIO STATE UNIVERSITY · PI AMBITE, JOSE LUIS, RAJASEKAR, ARCOT · 2020 to 2023
$1.7M
NCATS NIH HHS UL1 TR002548NIBIB NIH HHS U24 EB029005NIDA NIH HHS R01 DA053028
6 · The paper itself

Abstract

Epilepsy affects over 50 million persons worldwide, with less than 50% achieving long-term success following surgery. Traditional electrophysiology signal-based seizure detection methods are resource-intensive, laborious, and overlook multifocal brain interactions. Algebraic topology methods, particularly persistent homology, offer robust representations of complex brain interaction patterns. Leveraging persistent homology and the Google Gemini Pro Vision 1.0 large language model (LLM), we present a novel prompting template to classify topological structures computed from intracranial electroencephalography (iEEG) recordings from refractory epilepsy patients. This study marks the first use of persistence diagrams as input to a LLM for analyzing brain interaction dynamics. Our results indicate that simply prompting LLMs with persistence diagrams is insufficient for accurate seizure detection. Nonetheless, unlike traditional approaches using machine learning algorithms for EEG classification, our approach does not require large volumes of representative training data or brittle hyperparameter tuning, which highlights the promise of more scalable analyses in the future.

Indexed as

Artificial IntelligenceBrainEpilepsyAlgorithmsElectrocorticographyElectroencephalographyGenerative Artificial IntelligenceHumansSeizuresSignal Processing, Computer-Assisted

Identifiers

PMID40417558
PMCPMC12099319

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.