Evidence map›Paper›PMID 40417523›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2024

Optimizing Medication Querying Using Ontology-Driven Approach with OMOP: with an application to a large-scale COVID-19 EHR dataset.

Xiaojin Li, Yan Huang, Licong Cui, Shiqiang Tao, Guo-Qiang Zhang

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xiaojin LiMcGovern Medical School, The University of Texas Health Science Center at Houston, Houston, Texas 77030, USA.
Yan HuangMcGovern Medical School, The University of Texas Health Science Center at Houston, Houston, Texas 77030, USA.
Licong CuiMcWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas 77030, USA.
Shiqiang TaoMcGovern Medical School, The University of Texas Health Science Center at Houston, Houston, Texas 77030, USA.
Guo-Qiang ZhangMcGovern Medical School, The University of Texas Health Science Center at Houston, Houston, Texas 77030, USA.

Funding

SCH: Neurophysiological AI-Ready Data ResourceR01NS126690 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHANG, GUO-QIANG · 2022 to 2025
$1.2M
Biomedical Terminology Quality Assurance for Enhancing Clinical Queries over Electronic Health RecordsR01LM013335 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CUI, LICONG · 2020 to 2021
$663k
NINDS NIH HHS R01 NS126690NLM NIH HHS R01 LM013335
6 · The paper itself

Abstract

Efficient querying for medication information in Electronic Health Record (EHR) datasets is crucial for effective patient care and clinical research. To address the complexity and data volume challenges involved in efficient medication information retrieval, we propose an ontology-driven medication query (ODMQ) optimization approach, leveraging the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM). Integrating semantic ontology structures from the OMOP CDM can help enhance query accuracy and efficiency by broadening the scope of relevant medication terms like drug names, National Drug Codes, and generics, resulting in more comprehensive query outcomes than traditional methods. ODMQ significantly reduces manual search time and enhances query capabilities. We validate ODMQ's efficacy using real-world COVID-19 EHR data, demonstrating improved query performance. Through a comprehensive manual review, ODMQ ensures that expanded search terms are relevant to user inputs. It also includes an intuitive query interface and visualizes patient history for result validation and exploration.

Indexed as

Biological OntologiesElectronic Health RecordsInformation Storage and RetrievalCOVID-19HumansSARS-CoV-2Semantics

Identifiers

PMID40417523
PMCPMC12099415

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.