Evidence map›Paper›PMID 40417520›Full record

ArticleAMIA ... Annual Symposium proceedings. AMIA Symposium2024

A data-driven approach to discover and quantify systemic lupus erythematosus etiological heterogeneity from electronic health records.

Marco Barbero Mota, John M Still, Jorge L Gamboa, Eric V Strobl, Charles M Stein, Vivian K Kawai, Thomas A Lasko

Abstract read
In one paragraph

Article in AMIA ... Annual Symposium proceedings. AMIA Symposium, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marco Barbero MotaVanderbilt University Medical Center, Department of Biomedical Informatics.
John M StillVanderbilt University Medical Center, Department of Biomedical Informatics.
Jorge L GamboaVanderbilt University Medical Center, Department of Medicine.
Eric V StroblVanderbilt University Medical Center, Department of Psychiatry and Behavioral Sciences.
Charles M SteinVanderbilt University Medical Center, Department of Medicine.
Vivian K KawaiVanderbilt University Medical Center, Department of Medicine.
Thomas A LaskoVanderbilt University Medical Center, Department of Biomedical Informatics.

Funding

Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
Genome and Phenome to Define Disease Risk with Antinuclear AntibodiesR01AR076516 · NIAMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI KAWAI, VIVIAN K · 2020 to 2024
$2.8M
NCATS NIH HHS UL1 TR002243NIAMS NIH HHS R01 AR076516
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE) is a complex heterogeneous disease with many manifestational facets. We propose a data-driven approach to discover probabilistic independent sources from multimodal imperfect EHR data. These sources represent exogenous variables in the data generation process causal graph that estimate latent root causes of the presence of SLE in the health record. We objectively evaluated the sources against the original variables from which they were discovered by training supervised models to discriminate SLE from negative health records using a reduced set of labelled instances. We found 19 predictive sources with high clinical validity and whose EHR signatures define independent factors of SLE heterogeneity. Using the sources as input patient data representation enables models to provide with rich explanations that better capture the clinical reasons why a particular record is (not) an SLE case. Providers may be willing to trade patient-level interpretability for discrimination especially in challenging cases.

Indexed as

Electronic Health RecordsLupus Erythematosus, SystemicHumans

Identifiers

PMID40417520
PMCPMC12099369

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.