Evidence map›Paper›PMID 40417391›Full record

ArticleSustainable microbiology2025

Combinatorial characterization of bacterial taxa-driven differences in the microbiome of oyster beds.

Erika L Cyphert, Sanjiev Nand, Gabriela Franco, Michael Hajkowski, Luzmaria Soto, Danica Marvi Lee, Matthew C Ferner, Chela J Zabin, Jeffrey Blumenthal, Anna K Deck and 4 more

Abstract read
In one paragraph

Article in Sustainable microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Erika L CyphertSibley School of Mechanical and Aerospace Engineering, Cornell University, Ithaca, NY 14850, United States.ORCID https://orcid.org/0000-0002-6399-4220
Sanjiev NandDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.
Gabriela FrancoDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0009-0006-3393-3220
Michael HajkowskiDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0009-0007-6316-6269
Luzmaria SotoDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0009-0004-0080-5842
Danica Marvi LeeDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0009-0003-1660-2284
Matthew C FernerDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0000-0002-4862-9663
Chela J ZabinSmithsonian Environmental Research Center, Tiburon, CA 94920, United States.ORCID https://orcid.org/0000-0002-2636-0827
Jeffrey BlumenthalSmithsonian Environmental Research Center, Tiburon, CA 94920, United States.ORCID https://orcid.org/0000-0002-8736-7950
Anna K DeckEstuary & Ocean Science Center, San Francisco State University, Tiburon, CA 94920, United States.ORCID https://orcid.org/0000-0003-1940-2897
Katharyn E BoyerDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0000-0003-2680-2493
Laura W BurrusDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0000-0001-8279-979X
Christopher J HernandezDepartment of Orthopaedic Surgery, University of California, San Francisco, CA 94143, United States.ORCID https://orcid.org/0000-0002-0712-6533
Archana AnandDepartment of Biology, San Francisco State University, San Francisco, CA 94132, United States.ORCID https://orcid.org/0000-0002-1834-6187

Funding

The Microbiome and Bone StrengthR01AG067997 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNANDEZ, CHRISTOPHER JOHN · 2021 to 2025
$3.2M
Gut microbial factors that increase bone tissue strengthF32AG076244 · NIA · CORNELL UNIVERSITY · PI CYPHERT, ERIKA LEAH · 2022 to 2023
$127k
NIA NIH HHS F32 AG076244NIA NIH HHS R01 AG067997
6 · The paper itself

Abstract

Oyster reefs and beds provide crucial ecosystem services, including water filtration, coastal protection, and habitat provision for marine species. However, these habitats face significant threats from climate change and anthropogenic stressors. To address these challenges, numerous oyster restoration initiatives have been undertaken globally. Intertidal microbial communities, comprising diverse bacteria, archaea, and unicellular eukaryotes, drive key biogeochemical processes, but remain poorly understood in ecosystems targeted for oyster restoration. We investigated the microbiome associated with the Olympia oyster (

Indexed as

biofilmclimate changeOlympia oysterpopulationrestoration

Identifiers

PMID40417391
PMCPMC12102694

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.