Evidence map›Paper›PMID 40415027›Full record

ArticleScientific reports2025

Structure-function comparison of Arbekacin with other aminoglycosides elucidates its higher potency as bacterial translation inhibitor.

Soneya Majumdar, Narayan Prasad Parajuli, Xueliang Ge, Suparna Sanyal

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Metabolism-Based Biomarkers for Rapid Phenotypic Antibiotic Susceptibility Testing.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Soneya Majumdar *Department of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, 75124, Sweden.
Narayan Prasad Parajuli *Department of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, 75124, Sweden.
Xueliang GeDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, 75124, Sweden.
Suparna SanyalDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, 75124, Sweden. suparna.sanyal@icm.uu.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aminoglycoside antibiotics are well-known inhibitors of bacterial protein synthesis, which act mainly by inhibiting ribosomal translocation and inducing miscoding errors. Arbekacin (ABK) is a semisynthetic aminoglycoside that was developed by adding a 3-amino-2-hydroxybutyric (AHB) moiety to the 2-deoxystreptamine (2-DOS) ring of dibekacin for counteracting the problem of enzyme-mediated resistance of aminoglycosides. Here, we have systematically compared the inhibition efficacy of ABK with other aminoglycosides by in vivo MIC determination and in vitro fast-kinetics based translocation and termination assays complemented with a high-resolution cryo-EM structure. ABK presents significantly lower MIC

Indexed as

AminoglycosidesAnti-Bacterial AgentsDibekacinProtein BiosynthesisProtein Synthesis InhibitorsCryoelectron MicroscopyEscherichia coliKanamycinMicrobial Sensitivity TestsRibosomesStructure-Activity RelationshipAminoglycosidesAnti-Bacterial AgentsarbekacinDibekacinKanamycinProtein Synthesis Inhibitors

Identifiers

PMID40415027
PMCPMC12104382

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.