Evidence map›Paper›PMID 40414449›Full record

ReviewBiological psychiatry2025

Integrating Knowledge: The Power of Ontologies in Psychiatric Research and Clinical Informatics.

Melvin G McInnis, Ben Coleman, Eric Hurwitz, Peter N Robinson, Andrew E Williams, Melissa A Haendel, Julie A McMurry

Abstract readReview
In one paragraph

Review in Biological psychiatry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Psychiatry in the real world.Frontiers in psychiatry · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Melvin G McInnisDepartment of Psychiatry, University of Michigan, Ann Arbor, Michigan. Electronic address: mmcinnis@umich.edu.
Ben ColemanJackson Laboratory, University of Connecticut, Farmington, Connecticut.
Eric HurwitzDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina.
Peter N RobinsonJackson Laboratory, University of Connecticut, Farmington, Connecticut; Rahel Hirsch Center for Translational Medicine, Berlin Institute of Health at Charite, Berlin, Germany.
Andrew E WilliamsInstitute for Clinical Research and Health Policy, Tufts Medical Center, Boston, Massachusetts.
Melissa A HaendelDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina; School of Data Science and Society, University of North Carolina, Chapel Hill, North Carolina; Department of Pediatrics, University of North Carolina, Chapel Hill, North Carolina.
Julie A McMurryDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina; School of Data Science and Society, University of North Carolina, Chapel Hill, North Carolina.

Funding

Michigan Institute for Clinical and Health Research (MICHR)UM1TR004404 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Julie C Lumeng · 2023 to 2026
$39.8M
The Monarch Initiative: Linking Diseases to Model Organism ResourcesR24OD011883 · OD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAENDEL, MELISSA A, MUNGALL, CHRISTOPHER J · 2012 to 2024
$16.0M
Improvements to the LinkML framework to support the Phenomics First open science resourceRM1HG010860 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAENDEL, MELISSA A, MUNGALL, CHRISTOPHER J · 2020 to 2024
$10.3M
The Human Phenotype Ontology: Accelerating Computational Integration of Clinical Data for GenomicsU24HG011449 · NHGRI · JACKSON LABORATORY · PI Peter Nicholas Robinson · 2021 to 2026
$6.7M
Establishing Network Neuroscience Mechanisms of Efficiency of Evidence Accumulation in a Well-Characterized Sample with Bipolar Disorder: A Multi-Modal Clinical Imaging StudyR01MH130348 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Chandra Sekhar Sripada · 2022 to 2026
$3.6M
Detecting dynamic fluctuations in emotion, mood, and functioning: A digital phenotyping approach to clinical monitoring in bipolar disorderR01MH130411 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MELVIN G MCINNIS, Emily Kaplan Mower Provost · 2024 to 2026
$2.2M
Longitudinal Voice Patterns in Bipolar DisorderR34MH100404 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MCINNIS, MELVIN G · 2013 to 2015
$700k
MHealth Monitoring of Acoustic and Behavioral Patterns in Bipolar Disorder Across CulturesR21MH114835 · NIMH · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MCINNIS, MELVIN G · 2017 to 2018
$332k
NCATS NIH HHS UM1 TR004404NHGRI NIH HHS RM1 HG010860NHGRI NIH HHS U24 HG011449NIH HHS R24 OD011883NIMH NIH HHS R01 MH130348NIMH NIH HHS R01 MH130411NIMH NIH HHS R21 MH114835NIMH NIH HHS R34 MH100404
6 · The paper itself

Abstract

Ontologies are structured frameworks for representing knowledge by systematically defining concepts, categories, and their relationships. While widely adopted in biomedicine, ontologies remain largely absent in mental health research and clinical care, where the field continues to rely heavily on existing classification systems (e.g., the DSM). Although useful for clinical communication and administrative purposes, they lack the semantic structure, computational properties, and reasoning properties needed to integrate diverse data sources or support artificial intelligence-enabled analysis. This reliance on classification systems limits efforts to analyze and interpret complex, heterogeneous psychiatric data. In mood disorders, particularly bipolar disorder, the lack of formalized semantic models contributes to diagnostic inconsistencies, fragmented data structures, and barriers to precision medicine. By contrast, ontologies provide a standardized, machine-readable foundation for linking multimodal data sources, such as electronic health records, genetic and neuroimaging data, and social determinants of health, while enabling secure, deidentified computation. In this review, we survey the current landscape of mental health ontologies and highlight the Human Phenotype Ontology (HPO) as a promising framework for bridging psychiatric and medical phenotypes. We describe ongoing efforts to enhance the HPO through curated psychiatric terms, refined definitions, and structured mappings of observed phenomena. The Global Bipolar Cohort (GBC), an international collaboration, exemplifies this approach through the development of a consensus-driven ontology tailored to bipolar disorder. By supporting semantic interoperability, reproducible research, and individualized care, ontology-based approaches provide essential infrastructure for overcoming the limitations of classification systems and advancing data-driven precision psychiatry.

Indexed as

Biological OntologiesBiomedical ResearchMedical InformaticsMental DisordersPsychiatryHumansBipolar disorderNosologyOntologyPhenotype characterizationPrecision psychiatrySemantics

Identifiers

PMID40414449
PMCPMC12820783

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.