Evidence map›Paper›PMID 40413198›Full record

ArticleScientific data2025

Depth-dependent Metagenome-Assembled Genomes of Agricultural Soils under Managed Aquifer Recharge.

Júlia Brandão Gontijo, Laibin Huang, Elad Levintal, Cristina Prieto García, Christian B Erikson, Adolfo Coyotl, William R Horwath, Helen E Dahlke, Jorge L Mazza Rodrigues

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Júlia Brandão Gontijo *Department of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA.
Laibin Huang *Department of Biology, Saint Louis University, St. Louis, MO, 63103, USA.
Elad LevintalZuckerberg Institute for Water Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sde Boker Campus, 84990, Be'er Sheva, Israel.
Cristina Prieto GarcíaDepartment of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA.
Christian B EriksonDepartment of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA.
Adolfo CoyotlDepartment of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA.
William R HorwathDepartment of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA.
Helen E DahlkeDepartment of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA.
Jorge L Mazza RodriguesDepartment of Land, Air, and Water Resources, University of California, Davis, CA, 95616, USA. jmrodrigues@ucdavis.edu.ORCID http://orcid.org/0000-0002-6446-6462

Funding

Gordon and Betty Moore Foundation (Gordon E. and Betty I. Moore Foundation) 7975United States Department of Agriculture | National Institute of Food and Agriculture (NIFA) 2021-38420-34070
6 · The paper itself

Abstract

Managed Aquifer Recharge (MAR) systems, which intentionally replenish groundwater aquifers with excess water, are critical for addressing water scarcity exacerbated by demographic shifts and climate variability. To date, little is known about the functional diversity of the soil microbiome at different soil depth inhabiting agricultural soils used for MAR. Knowing the functional diversity is pivotal in regulating nutrient cycling and maintaining soil health. Metagenomics, particularly Metagenome-Assembled Genomes (MAGs), provide a powerful tool to explore the diversity of uncultivated soil microbes, facilitating in-depth investigations into microbial functions. In a field experiment conducted in a California vineyard, we sequenced soil DNA before and after water application of MAR. Through this process, we assembled 146 medium and 14 high-quality MAGs, uncovering a wide array of archaeal and bacterial taxa across different soil depths. These findings advance our understanding of the microbial ecology and functional diversity of soils used for MAR, contributing to the development of more informed and sustainable land management strategies.

Indexed as

GroundwaterMetagenomeSoil MicrobiologyAgricultureArchaeaBacteriaCaliforniaMetagenomicsMicrobiotaSoilSoil

Identifiers

PMID40413198
PMCPMC12103596

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.