Evidence map›Paper›PMID 40408300›Full record

ArticleHepatology communications2025

Changes in the FXR-cistrome and alterations in bile acid physiology in Wilson disease.

Clavia Ruth Wooton-Kee, Hari K Yalamanchili, Islam Mohamed, Manal Hassan, Kenneth D R Setchell, Monica Narvaez Rivas, Ayse K Coskun, Vasanta Putluri, Nagireddy Putluri, Prasun Jalal and 2 more

Abstract read
In one paragraph

Article in Hepatology communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Clavia Ruth Wooton-KeeDepartment of Pediatrics-Nutrition, Children's Nutrition Research Center, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0003-4485-0747
Hari K YalamanchiliDepartment of Pediatrics-Nutrition, Children's Nutrition Research Center, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0001-9892-3054
Islam MohamedDepartment of Internal Medicine, Baylor College of Medicine, Houston, Texas, USA.
Manal HassanDepartment of Epidemiology, Division of Cancer Prevention and Population Sciences, MD Anderson Cancer Center, Houston, Texas, USA.
Kenneth D R SetchellDivision of Pathology and Laboratory Medicine, Cincinnati Children's Hospital, Cincinnati, Ohio, USA.
Monica Narvaez RivasDivision of Pathology and Laboratory Medicine, Cincinnati Children's Hospital, Cincinnati, Ohio, USA.
Ayse K CoskunDepartment of Medicine and Surgery, Yale School of Medicine, New Haven, Connecticut, USA.ORCID 0000-0002-9339-3418
Vasanta PutluriDepartment of Cellular and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.
Nagireddy PutluriDepartment of Cellular and Molecular Biology, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0003-4488-7400
Prasun JalalDepartment of Internal Medicine, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0001-5353-2324
Michael L SchilskyDepartment of Medicine and Surgery, Yale School of Medicine, New Haven, Connecticut, USA.ORCID 0000-0001-9043-0554
David D MooreDepartment of Nutrition Sciences and Toxicology, University of California, Berkeley, Berkeley, California, USA.ORCID 0000-0002-5151-9748

Funding

Biomarkers for treatment monitoring and prognostication of disorders of hepatic copper metabolismR01DK137861 · NIDDK · YALE UNIVERSITY · PI MICHAEL L SCHILSKY · 2024 to 2026
$2.1M
Nuclear Receptor Dysfunction Reprograms Metabolism and Cellular Proliferation in Wilson's DiseaseR01DK129579 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Clavia Ruth Wooton-Kee · 2022 to 2026
$1.6M
Nuclear Receptors as Novel Therapeutic Targets for Wilson’s DiseaseK01DK111716 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI WOOTON-KEE, CLAVIA RUTH · 2017 to 2021
$746k
NIDDK NIH HHS K01 DK111716NIDDK NIH HHS R01 DK129579NIDDK NIH HHS R01 DK137861
6 · The paper itself

Abstract

backgroundWilson disease (WD) is an autosomal recessive disorder that results in excessive hepatic copper, causing hepatic steatosis, inflammation, fibrosis, cirrhosis, and liver failure. Previous studies have revealed dysregulation of many farnesoid X receptor (FXR) metabolic target genes in WD, including the bile salt exporter pump, the major determinant of bile flow.

methodsWe tested the hypothesis that the FXR-cistrome is decreased in Atp7b-/- mice in accord with dysregulated bile acid homeostasis.

resultsFXR binding within Atp7b-/- mouse livers displayed surprising complexity: FXR binding was increased in distal intergenic regions but decreased in promoter regions in Atp7b-/- versus wild-type mice. Decreased FXR occupancy in Atp7b-/- versus wild-type mice was observed in hepatocyte metabolic and bile acid homeostasis pathways, while enrichment of FXR binding was observed in pathways associated with cellular damage outside of hepatocytes. Indeed, disparate FXR occupancy was identified in parenchymal and non-parenchymal marker genes in a manner that suggests decreased FXR activity in parenchymal cells, as expected, and increased FXR activity in non-parenchymal cells. Consistent with altered FXR function, serum and liver bile acid concentrations were higher in Atp7b-/- mice than in wild-type mice. Comparison of bile acid profiles in the serum of WD patients with "liver," "neurological," or "mixed" disease versus healthy controls also revealed increases in specific bile acids in WD-liver versus healthy controls.

conclusionsWe identified novel FXR-occupancy across the genome that varied in parenchymal and non-parenchymal cells, demonstrating complex FXR regulation of metabolic and hepatocellular stress pathways in Atp7b-/- mice. Dynamic changes in FXR activity support our novel finding of altered bile acid metabolism in Atp7b-/- mice and WD patients.

Indexed as

Bile Acids and SaltsCopper-Transporting ATPasesHepatolenticular DegenerationReceptors, Cytoplasmic and NuclearAnimalsDisease Models, AnimalFemaleHomeostasisHumansLiverMaleMiceMice, KnockoutReceptor, Farnesoid X-ActivatedAtp7b protein, mouseBile Acids and SaltsCopper-Transporting ATPasesReceptor, Farnesoid X-ActivatedReceptors, Cytoplasmic and Nuclearbile acidscopperFXRnuclear receptorsWilson disease

Identifiers

PMID40408300
PMCPMC12106221

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.