Evidence map›Paper›PMID 40407923›Full record

ReviewMolecular biology reports2025

Rewriting the urinary tract paradigm: the urobiome as a gatekeeper of host defense.

Agnieszka Pastuszka, Szymon Tobor, Igor Łoniewski, Anna Wierzbicka-Woś, Katarzyna Sielatycka, Daniel Styburski, Danuta Cembrowska-Lech, Tomasz Koszutski, Marek Kurowicz, Klaudia Korlacka and 5 more

Abstract readReview
In one paragraph

Review in Molecular biology reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Urinary tract infections in children.Nature reviews. Urology · 2026
    Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Agnieszka PastuszkaChair and Department of Descriptive and Topographic Anatomy, Faculty of Medical Sciences in Zabrze, Medical University of Silesia, Katowice, Poland.
Szymon ToborDepartment of Pediatric Surgery and Urology, Faculty of Medical Sciences in Katowice, Medical University of Silesia, Katowice, Poland.
Igor ŁoniewskiDepartment of Biochemical Science, Faculty of Health Sciences, Pomeranian Medical University in Szczecin, Szczecin, Poland.
Anna Wierzbicka-WośSanprobi Sp. z. o. o sp. k., Szczecin, Poland.
Katarzyna SielatyckaSanprobi Sp. z. o. o sp. k., Szczecin, Poland.
Daniel StyburskiSanprobi Sp. z. o. o sp. k., Szczecin, Poland.
Danuta Cembrowska-LechSanprobi Sp. z. o. o sp. k., Szczecin, Poland.
Tomasz KoszutskiDepartment of Pediatric Surgery and Urology, Faculty of Medical Sciences in Katowice, Medical University of Silesia, Katowice, Poland.
Marek KurowiczChair and Department of Descriptive and Topographic Anatomy, Faculty of Medical Sciences in Zabrze, Medical University of Silesia, Katowice, Poland.
Klaudia KorlackaDepartment of Pediatric Surgery and Urology, Faculty of Medical Sciences in Katowice, Medical University of Silesia, Katowice, Poland.
Albert PodkówkaDepartment of Biochemical Science, Faculty of Health Sciences, Pomeranian Medical University in Szczecin, Szczecin, Poland.
Artur LemińskiDepartment of Biochemical Science, Faculty of Health Sciences, Pomeranian Medical University in Szczecin, Szczecin, Poland.
Andrzej BrodkiewiczDepartment of Pediatrics, Child Nephrology, Dialysotherapy and Management of Acute Poisoning, Pomeranian Medical University in Szczecin, Szczecin, Poland.
Lidia Hyla-KlekotDepartment of Pediatric Surgery and Urology, Faculty of Medical Sciences in Katowice, Medical University of Silesia, Katowice, Poland.
Karolina Skonieczna-ŻydeckaDepartment of Biochemical Science, Faculty of Health Sciences, Pomeranian Medical University in Szczecin, Szczecin, Poland. karzyd@pum.edu.pl.ORCID https://orcid.org/0000-0002-3430-9079

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The urobiome, or urinary tract microbiome, has emerged as a crucial component in maintaining urinary health and defending against infections. Recent advances in next-generation sequencing (NGS) have debunked the long-held belief that the urinary tract is sterile, revealing a unique ecosystem of microorganisms. The urobiome interacts with the urothelium and mucosa-associated lymphoid tissue (MALT) to support local immunity, playing an integral role in defending the urinary tract against pathogens. Through complex communication processes like quorum sensing, the urobiome regulates microbial behavior and controls interactions with host tissues, helping to prevent pathogen colonization and infection. However, dysbiosis in the urobiome can disrupt this balance, making the urinary tract more susceptible to infections, including urinary tract infections (UTIs). Studies have highlighted specific microbial compositions associated with both healthy and disease states, suggesting that shifts in the urobiome may correlate with various urological diseases. Furthermore, microbial diversity within the urinary tract differs by factors such as age and gender, reflecting the dynamic nature of the urobiome. Future research focusing on the interplay between the urobiome, host immune defenses, and pathogenic mechanisms may lead to innovative diagnostic and therapeutic approaches. Understanding how microbial composition changes during disease states could enable targeted treatments, potentially reducing reliance on antibiotics and minimizing resistance issues. The urobiome thus represents a promising frontier in urology, with implications for enhancing urinary health and treating infections more effectively.

Indexed as

MicrobiotaUrinary TractUrinary Tract InfectionsAnimalsDysbiosisHost-Pathogen InteractionsHumansUrotheliumBacteriaMicrobiomeUrinary tractUrobiome

Identifiers

PMID40407923
PMCPMC12102141

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.