Evidence map›Paper›PMID 40407702›Full record

ArticleMolecular omics2025

A multi-omics machine learning classifier for outgrowth of cow's milk allergy in children.

Diana M Hendrickx, Mariyana V Savova, Pingping Zhu, Ran An, Sjef Boeren, Kelly Klomp, Sumanth K Mutte, Presto Study Team, Harm Wopereis, Renate G van der Molen and 2 more

Abstract read
In one paragraph

Article in Molecular omics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Diana M HendrickxLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands. clara.belzer@wur.nl.
Mariyana V SavovaMetabolomics and Analytics Centre, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Pingping ZhuMetabolomics and Analytics Centre, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Ran AnLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands. clara.belzer@wur.nl.ORCID http://orcid.org/0000-0002-5475-3353
Sjef BoerenLaboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands.
Kelly KlompLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands. clara.belzer@wur.nl.
Sumanth K MutteLaboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands.
Presto Study Team
Harm WopereisDanone Nutricia Research, Utrecht, The Netherlands.
Renate G van der MolenDepartment of Laboratory Medicine, Laboratory of Medical Immunology, Radboudumc, Nijmegen, The Netherlands.
Amy C HarmsMetabolomics and Analytics Centre, Leiden Academic Centre for Drug Research, Leiden University, Leiden, The Netherlands.
Clara BelzerLaboratory of Microbiology, Wageningen University, Wageningen, The Netherlands. clara.belzer@wur.nl.ORCID http://orcid.org/0000-0001-6922-836X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cow's milk protein allergy (CMA) is one of the most common food allergies in children worldwide. However, it is still not well understood why certain children outgrow their CMA and others do not. While there is increasing evidence for a link of CMA with the gut microbiome, it is still unclear how the gut microbiome and metabolome interact with the immune system. Integrating data from different omics platforms and clinical data can help to unravel these interactions. In this study, we integrate clinical, microbial, (meta)proteomics, immune and metabolomics data into machine learning (ML) classification, using multi-view learning by late integration. The aim is to group infants into those that outgrew their CMA and those that did not. The results show that integration of microbiome data with clinical, immune, (meta)proteomics and metabolomics data could considerably improve classification of infants on outgrowth of CMA, compared to only considering one type of data. Moreover, pathways previously linked to development of CMA could also be related to outgrowth of this allergy.

Indexed as

Machine LearningMilk HypersensitivityAnimalsCattleChildChild, PreschoolFemaleGastrointestinal MicrobiomeHumansInfantMaleMetabolomeMetabolomicsMultiomicsProteomics

Identifiers

PMID40407702
PMCPMC12101220

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.