Evidence map›Paper›PMID 40405206›Full record

ArticleMicrobial cell factories2025

Region-based segmental swapping of homologous enzymes for higher cadaverine production.

Seungjin Kim, Dae-Yeol Ye, Hyun Gyu Lim, Myung Hyun Noh, Jae-Seong Yang, Gyoo Yeol Jung

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Article in Microbial cell factories, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Seungjin Kim *Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, 37673, Gyeongbuk, Korea.
Dae-Yeol Ye *Department of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, 37673, Gyeongbuk, Korea.
Hyun Gyu LimDepartment of Biological Sciences and Bioengineering, Inha University, 100 Inha-Ro, Michuhol-Gu, Incheon, 22212, Korea.
Myung Hyun NohResearch Center for Bio-based Chemistry, Korea Research Institute of Chemical Technology (KRICT), 406-30, Jongga-ro, Jung-gu, Ulsan, 44429, Korea. mhnoh@krict.re.kr.
Jae-Seong YangCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona, 08193, Spain. jaeseong.yang@cragenomica.es.
Gyoo Yeol JungDepartment of Chemical Engineering, Pohang University of Science and Technology, 77 Cheongam-Ro, Nam-Gu, Pohang, 37673, Gyeongbuk, Korea. gyjung@postech.ac.kr.

Funding

MCIN/AEI/10.13039/501100011033, ESF Investing in your future RYC2020-028880-INational Research Foundation of Korea RS-2024-00400033
6 · The paper itself

Abstract

backgroundCadaverine, displaying potential in medicine, agriculture and polyamide production, is biologically produced through L-lysine decarboxylation. Considering the potential of the polyamide market, its biological production has been focused on with following diverse efforts to improve the production. In Escherichia coli, lysine decarboxylase exists in two forms: CadA and LdcC, and it is known that CadA exhibits superior catalytic activity compared to LdcC. Despite its potential, cadaverine production is limited due to increased intracellular pH, which destabilizes the decameric structure of CadA and inhibits its activity.

resultsIn this study, based on the structural analysis, a chimeric CadA enzyme, CL2, was engineered by replacing its pH-sensitive region with a structurally stable counterpart derived from LdcC. The resulting BLCL2 strain with CL2 produced 1.12 g/L of cadaverine-1.96 times higher than BLC strain with the wild type CadA in flask culture. Compared to the wild type CadA, structural modifications enhanced pH stability and improved the affinity of CadA toward pyridoxal 5-phosphate (PLP), its cofactor.

conclusionsThis study developed the improved strains for cadaverine production by creating the new enzyme, which is validated by enhanced amount of cadaverine. In addition, the segmental swapping guided by structure analysis was exhibited as the one of effective method in protein engineering strategies. These advancements offer a promising approach to optimizing cadaverine biosynthesis for industrial applications.

Indexed as

CadaverineCarboxy-LyasesEscherichia coliEscherichia coli ProteinsHydrogen-Ion ConcentrationPyridoxal PhosphateCadaverineCarboxy-LyasesEscherichia coli Proteinslysine decarboxylasePyridoxal PhosphateCadaverineChimeric enzymeCofactor affinityLysine decarboxylasepH stability

Identifiers

PMID40405206
PMCPMC12096693

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.