Evidence map›Paper›PMID 40405063›Full record

ArticleBMC cancer2025

Novel Gene expression-based Risk Stratification tool predicts recurrence in Non-muscle invasive Bladder cancer.

Srivatsa N, Hari Ps, Rahul P, Lista Paul, Durgadevi Veeraiyan, Ambili Narikot, Vidya Veldore, Nishtha Tanwar, Peddagangannagari Sreekanthreddy, Hitesh Goswami and 3 more

Abstract read
In one paragraph

Article in BMC cancer, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

13 authors.

Srivatsa N *Department of Uro Oncology, Sri Shankara Cancer Hospital and Research Center, Sri Shankara Cancer Foundation, Bangalore, India.
Hari Ps *Department of Molecular Oncology, Sri Shankara National Center for Cancer Prevention and Research, Sri Shankara Cancer Foundation, Bangalore, India.
Rahul PDepartment of Uro Oncology, Sri Shankara Cancer Hospital and Research Center, Sri Shankara Cancer Foundation, Bangalore, India.
Lista PaulDepartment of Surgical Oncology, Sri Shankara Cancer Hospital and Research Center, Sri Shankara Cancer Foundation, Bangalore, India.
Durgadevi VeeraiyanDepartment of Molecular Oncology, Sri Shankara National Center for Cancer Prevention and Research, Sri Shankara Cancer Foundation, Bangalore, India.
Ambili NarikotDepartment of Molecular Oncology, Sri Shankara National Center for Cancer Prevention and Research, Sri Shankara Cancer Foundation, Bangalore, India.
Vidya VeldoreBaseCare Pvt Ltd, Bangalore, India.
Nishtha TanwarBaseCare Pvt Ltd, Bangalore, India.
Peddagangannagari SreekanthreddyBaseCare Pvt Ltd, Bangalore, India.
Hitesh GoswamiBaseCare Pvt Ltd, Bangalore, India.
Rekha V KumarDepartment of Pathology, Sri Shankara Cancer Hospital and Research Center, Sri Shankara Cancer Foundation, Bangalore, India.
B S SrinathDepartment of Surgical Oncology, Sri Shankara Cancer Hospital and Research Center, Sri Shankara Cancer Foundation, Bangalore, India.
Aruna KorlimarlaDepartment of Molecular Oncology, Sri Shankara National Center for Cancer Prevention and Research, Sri Shankara Cancer Foundation, Bangalore, India. aruna.k@ssnccpr.org.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBladder cancer represents a heterogeneous disease with distinct clinical challenges. Non-muscle invasive bladder cancer (NMIBC) typically presents as indolent and slow-growing, yet a critical clinical challenge remains: identifying which patients will progress to muscle-invasive disease requiring radical interventions. Early detection of progression propensity is essential, as once muscle invasion occurs, the risk of distant metastasis increases substantially, and treatment shifts from conservative TURBT (Transurethral Resection of Bladder Tumor) to aggressive surgical interventions with significant morbidity. Current risk stratification methods fail to adequately predict this transition in approximately 30% of cases, highlighting the urgent need for more accurate prognostic tools.

objectiveThis retrospective study aimed to develop and validate a transcriptomics-based mRNA score for predicting early NMIBC recurrence, comparing its performance against traditional risk stratification methods.

methodsWe analyzed mRNA expression profiles from primary retrospective NMIBC tumor specimens (n = 25) collected between [2018-2022]. Traditional risk stratification tools, including EORTC scoring, were applied alongside our novel mRNA-based risk score to evaluate predictive accuracy for recurrence.

resultsThe transcriptomics-based mRNA score demonstrated a median prediction accuracy of 90% across 10,000 resampling iterations for predicting early NMIBC recurrence, significantly outperforming traditional EORTC risk scores. Our comprehensive gene set identified 435 differentially expressed genes associated with recurrence. Kaplan-Meier analysis showed significantly different recurrence-free survival between high and low mRNA risk score groups (Bonferroni corrected p-value < 0.0001).

conclusionsThis retrospective analysis confirms that mRNA expression-based risk stratification provides superior predictive accuracy compared to conventional clinicopathologic risk tools. Implementation of this gene signature could potentially reduce over-investigation and improve surveillance cost-effectiveness after TURBT in patients with primary high-risk NMIBC. These findings may transform the clinical management paradigm by enabling more personalized follow-up protocols based on molecular risk assessment.

Indexed as

Biomarkers, TumorNeoplasm Recurrence, LocalUrinary Bladder NeoplasmsAgedAged, 80 and overFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedNeoplasm InvasivenessNon-Muscle Invasive Bladder NeoplasmsPrognosisRetrospective StudiesRisk AssessmentBiomarkers, TumorRNA, MessengerBladder CancerClassifier SignatureEORTCSubtypesTargeted therapy

Identifiers

PMID40405063
PMCPMC12096726

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.