Evidence map›Paper›PMID 40404713›Full record

ArticleScientific reports2025

SEOR2 in Arabidopsis mediates Ca

Keziah Omenge, Ottone Carmelo Viscardo, Fernando Rodrigo De Oliveira Cantao, Simonetta Santi, Aart Jan Eeuwe van Bel, Rita Musetti

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Keziah Omenge *Institute for Biosafety in Plant Biotechnology (SB), Julius Kühn-Institut (JKI) - Federal Research Centre for Cultivated Plants, Erwin-Baur-Straße 27, 06484, Quedlinburg, Germany.
Ottone Carmelo Viscardo *Department of Land, Environment, Agriculture and Forestry (TESAF), University of Padova, Viale Dell'Università 16, 35020, Legnaro, PD, Italy.
Fernando Rodrigo De Oliveira CantaoDepartment of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Via delle Scienze 206, 33100, Udine, Italy.
Simonetta SantiDepartment of Agricultural, Food, Environmental and Animal Sciences, University of Udine, Via delle Scienze 206, 33100, Udine, Italy.
Aart Jan Eeuwe van BelInstitute of Phytopathology, Justus-Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany.
Rita MusettiDepartment of Land, Environment, Agriculture and Forestry (TESAF), University of Padova, Viale Dell'Università 16, 35020, Legnaro, PD, Italy. rita.musetti@unipd.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arabidopsis seor1ko line, which expresses the protein AtSEOR2 free of its bond with AtSEOR1, exhibits a lower phytoplasma titre as compared to wild type plants. In search for mechanism(s) underlying potential SEOR2-mediated defense responses the transcriptome of healthy wild type and Atseor1ko plants was disclosed by RNA sequencing. Comparative transcriptome analysis revealed 1036 differentially expressed genes (DEGs, 893 up- and 143 down-regulated) between the Atseor1ko line and the wild type. Sequence annotation and classification of the up-regulated genes identified "plant-pathogen interaction" among the most enriched clusters. The "plant-pathogen interaction" cluster included genes encoding members of the protein kinase superfamily, actors in calcium/calmodulin signaling transduction and WRKY transcription factors. An interaction network analysis and a host-phytoplasma interaction map demonstrated that AtSEOR2 protein could interact with the calcium-binding proteins CAM2 and TCH3. The latter one also turned out to be an indirect target of the SAP54

Indexed as

ArabidopsisArabidopsis ProteinsCalciumPhytoplasmaPlant DiseasesCalcium-Binding ProteinsGene Expression ProfilingGene Expression Regulation, PlantHost-Pathogen InteractionsTranscription FactorsTranscriptomeArabidopsis ProteinsAT2G22300 protein, ArabidopsisCalciumCalcium-Binding ProteinsTranscription FactorsArabidopsisAtSEOR2EffectorsInteractionPhloemPhytoplasmaPlant defense

Identifiers

PMID40404713
PMCPMC12098911

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.