Evidence map›Paper›PMID 40403727›Full record

ArticleMolecular cell2025

A specific form of cPRC1 containing CBX4 is co-opted to mediate oncogenic gene repression in diffuse midline glioma.

Eimear Lagan, Dáire Gannon, Ademar Jesus Silva, Peter Bibawi, Anthony M Doherty, Darragh Nimmo, Rachel McCole, Craig Monger, Giovani Luiz Genesi, Aurelie Vanderlinden and 18 more

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Investigating oncoprotein-mediated chromatin dysregulation inbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Eimear LaganSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland; Cancer Research UK Edinburgh Centre, Institute of Genetics and Cancer University of Edinburgh, Edinburgh, UK; MRC Human Genetics Unit, Institute of Genetics and Cancer, The University of Edinburgh, Edinburgh, UK.
Dáire GannonSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland.
Ademar Jesus SilvaSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland.
Peter BibawiDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, Perelman School of Medicine, Philadelphia, PA 19104, USA; Abramson Cancer Center, Perelman School of Medicine, Philadelphia, PA 19104, USA.
Anthony M DohertySmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland; Cancer Research UK Edinburgh Centre, Institute of Genetics and Cancer University of Edinburgh, Edinburgh, UK; MRC Human Genetics Unit, Institute of Genetics and Cancer, The University of Edinburgh, Edinburgh, UK.
Darragh NimmoSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland.
Rachel McColeSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland.
Craig MongerSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland.
Giovani Luiz GenesiDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, Perelman School of Medicine, Philadelphia, PA 19104, USA; Abramson Cancer Center, Perelman School of Medicine, Philadelphia, PA 19104, USA.
Aurelie VanderlindenDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, Perelman School of Medicine, Philadelphia, PA 19104, USA; Abramson Cancer Center, Perelman School of Medicine, Philadelphia, PA 19104, USA.
James A InnesDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, Perelman School of Medicine, Philadelphia, PA 19104, USA; Abramson Cancer Center, Perelman School of Medicine, Philadelphia, PA 19104, USA.
Charlotte L E JonesCancer Research UK Edinburgh Centre, Institute of Genetics and Cancer University of Edinburgh, Edinburgh, UK; MRC Human Genetics Unit, Institute of Genetics and Cancer, The University of Edinburgh, Edinburgh, UK.
Lu YangDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA 91010, USA.
Bryan ChenDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA 91010, USA.
Guido van MierloDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands.
Pascal W T C JansenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands.
Chinmayi PednekarCancer Research UK Edinburgh Centre, Institute of Genetics and Cancer University of Edinburgh, Edinburgh, UK.
Alexander Von KriegsheimCancer Research UK Edinburgh Centre, Institute of Genetics and Cancer University of Edinburgh, Edinburgh, UK.
Kieran WynneSystems Biology Ireland, University College Dublin, Belfield, Dublin 4, Ireland.
Francisco J Sánchez-RiveraKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Boston, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Yadira M Soto-FelicianoKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Boston, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Angel M CarcabosoDepartment of Pediatric Hematology and Oncology, Hospital Sant Joan de Déu Barcelona, Barcelona, Spain.
Michiel VermeulenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, the Netherlands; Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX Amsterdam, the Netherlands.
Giorgio OlivieroSystems Biology Ireland, University College Dublin, Belfield, Dublin 4, Ireland.
Chun-Wei ChenDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA 91010, USA.
Richard E PhillipsDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Epigenetics Program, Perelman School of Medicine, Philadelphia, PA 19104, USA; Abramson Cancer Center, Perelman School of Medicine, Philadelphia, PA 19104, USA. Electronic address: richard.phillips@pennmedicine.upenn.edu.
Adrian P BrackenSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland. Electronic address: adrian.bracken@tcd.ie.
Gerard L BrienSmurfit Institute of Genetics, Trinity College Dublin, Dublin 2, Ireland; Cancer Research UK Edinburgh Centre, Institute of Genetics and Cancer University of Edinburgh, Edinburgh, UK; MRC Human Genetics Unit, Institute of Genetics and Cancer, The University of Edinburgh, Edinburgh, UK. Electronic address: gbrien@ed.ac.uk.

Funding

Deciphering mechanisms of transcriptional repression which drive midline gliomaR01CA288596 · NCI · UNIVERSITY OF PENNSYLVANIA · PI Richard E Phillips · 2024 to 2026
$2.4M
Mechanism and therapeutic opportunities of targeting the Tudor domainR01CA278050 · NCI · MAYO CLINIC ROCHESTER · PI Chun-Wei David Chen · 2023 to 2026
$2.0M
Understanding mechanisms of transcriptional regulation by chromatin adaptor proteinsR00GM140265 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SOTO-FELICIANO, YADIRA M · 2022 to 2024
$747k
NCI NIH HHS R01 CA278050NCI NIH HHS R01 CA288596NIGMS NIH HHS R00 GM140265Wellcome Trust
6 · The paper itself

Abstract

Diffuse midline glioma (DMG) is a fatal childhood brain tumor characterized primarily by mutant histone H3 (H3K27M). H3K27M causes a global reduction in Polycomb repressive complex 2 (PRC2)-mediated H3K27 trimethylation (H3K27me3). Paradoxically, PRC2 is essential in DMG cells, although the downstream molecular mechanisms are poorly understood. Here, we have discovered a specific form of canonical PRC1 (cPRC1) containing CBX4 and PCGF4 that drives oncogenic gene repression downstream of H3K27me3 in DMG cells. Via a novel functional region, CBX4 preferentially associates with PCGF4-containing cPRC1. The characteristic H3K27me3 landscape in DMG rewires the distribution of cPRC1 complexes, with CBX4/PCGF4-cPRC1 accumulating at H3K27me3-enriched CpG islands. Despite comprising <5% of cPRC1 in DMG cells, the unique repressive functions of CBX4/PCGF4-cPRC1 are essential for DMG growth. Our findings link the altered distribution of H3K27me3 to imbalanced cPRC1 function, which drives oncogenic gene repression in DMG, highlighting potential therapeutic opportunities for this incurable childhood brain cancer.

Indexed as

Brain NeoplasmsGliomaLigasesPolycomb Repressive Complex 1AnimalsCell Line, TumorCell ProliferationGene Expression Regulation, NeoplasticHistonesHumansMethylationMicePolycomb-Group ProteinsUbiquitin-Protein LigasesCBX4 protein, humanHistonesLigasesPolycomb-Group ProteinsPolycomb Repressive Complex 1Ubiquitin-Protein LigasesCBX4diffuse intrinic pontine gliomadiffuse midline gliomaEZH2H3K27MH3K27me3PCGF4PolycombPRC1PRC2

Identifiers

PMID40403727
PMCPMC12191925

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