Evidence map›Paper›PMID 40403716›Full record

ArticleStructure (London, England : 1993)2025

The molecular mechanisms of visual chromophore release from cellular retinaldehyde-binding protein.

Daniel Santos, Lorenzo Foglia, Philip D Kiser, Alvin Yu

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Voltage-sensor conformational microenvironments encode isoform-selective ion channel activation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniel SantosDepartment of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92617, USA.
Lorenzo FogliaDepartment of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92617, USA.
Philip D KiserDepartment of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92617, USA; Department of Ophthalmology, University of California, Irvine, Irvine, CA 92617, USA; Department of Clinical Pharmacy Practice, University of California, Irvine, Irvine, CA 92697, USA; Research Service, VA Long Beach Healthcare System, Long Beach, CA 92697, USA. Electronic address: pkiser@uci.edu.
Alvin YuDepartment of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92617, USA. Electronic address: alviny6@uci.edu.

Funding

Chemical Biology of the Visual PigmentsR01EY034519 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Philip David Kiser, Krzysztof Palczewski · 2023 to 2026
$2.0M
Theory and SImulation of Viral ReplicationR00AI167034 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI YU, ALVIN · 2023 to 2024
$498k
BLRD VA I01 BX004939BLRD VA IK6 BX006800NEI NIH HHS R01 EY034519NIAID NIH HHS R00 AI167034
6 · The paper itself

Abstract

Cellular retinaldehyde-binding protein (CRALBP) is an 11-cis-retinoid binding protein operating within the visual cycle. CRALBP serves as the terminal acceptor of 11-cis-retinaldehyde (11cRAL) produced within the retinal pigment epithelium (RPE) and mediates 11cRAL transport to the RPE apical microvilli. Crystallographic structures of CRALBP revealed that the 11cRAL-binding pocket is sealed off from bulk solvent, indicating a necessity for conformational changes to allow ligand egress. Here, we performed long timescale all-atom molecular dynamics simulations of CRALBP to elucidate the mechanisms of ligand release. CRALBP exhibits slower diffusive behavior in the presence of membranes containing negatively charged phospholipids, which bind to an exposed cationic pocket in CRALBP. Umbrella sampling calculations revealed thermodynamically likely pathways for 11cRAL egress. Our data suggest that the CRALBP-acidic phospholipid interaction facilitates 11cRAL release through allosteric, conformational changes that perturb the binding site, lowering ligand affinity. These findings offer insights into the molecular pathology of CRALBP-associated retinopathy.

Indexed as

Carrier ProteinsRetinaldehydeRetinol-Binding Proteins, CellularBinding SitesHumansMolecular Dynamics SimulationPhospholipidsProtein BindingProtein ConformationThermodynamics11-cis-retinal-binding proteinCarrier ProteinsPhospholipidsRetinaldehydeRetinol-Binding Proteins, Cellularcellular retinaldehyde-binding proteinfree energy landscapesmolecular dynamics simulationsretinoidvisual cyclevisual proteins

Identifiers

PMID40403716
PMCPMC12335373

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.