Evidence map›Paper›PMID 40402244›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Dinucleotide preferences underlie apparent codon preference reversals in the

Haruka Yamashita, Tomotaka Matsumoto, Kent Kawashima, Hassan Sibroe Abdulla Daanaa, Ziheng Yang, Hiroshi Akashi

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haruka YamashitaLaboratory of Evolutionary Genetics, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0003-3383-1022
Tomotaka MatsumotoLaboratory of Evolutionary Genetics, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Kent KawashimaLaboratory of Evolutionary Genetics, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Hassan Sibroe Abdulla DaanaaLaboratory of Evolutionary Genetics, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Ziheng YangDepartment of Genetics, Evolution and Environment, University College London, London WC1E 6BT, United Kingdom.ORCID 0000-0003-3351-7981
Hiroshi AkashiLaboratory of Evolutionary Genetics, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.ORCID 0000-0001-5325-6999

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We employ fine-scale population genetic analyses to reveal dynamics among interacting forces that act at synonymous sites and introns among closely related

Indexed as

CodonCodon UsageDrosophila melanogasterNucleotidesAnimalsEvolution, MolecularGenetics, PopulationIntronsPolymorphism, GeneticSelection, GeneticCodonNucleotidescodon usageDrosophilamajor codon preferencenearly neutral evolutionpopulation genetics

Identifiers

PMID40402244
PMCPMC12130887

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.