Evidence map›Paper›PMID 40402243›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Horizontal transmission of functionally diverse transposons is a major source of new introns.

Landen Gozashti, Anne Nakamoto, Shelbi Russell, Russell Corbett-Detig

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Horizontal transmission of functionally diverse transposons is a major source of new introns.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Landen GozashtiDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138.ORCID 0000-0001-6023-3138
Anne NakamotoDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0002-6753-7238
Shelbi RussellDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0001-6734-2740
Russell Corbett-DetigDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064.ORCID 0000-0001-6535-2478

Funding

Origins, Functional, and Evolutionary Consequences of Genomic VariationR35GM128932 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Russell Corbett-Detig · 2018 to 2026
$3.2M
UCSC Graduate Program in Genome SciencesT32HG012344 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Angela Norie Brooks, Christopher Vollmers · 2022 to 2026
$1.5M
Cellular mechanisms of endosymbiont transmission between host generationsR00GM135583 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI RUSSELL, SHELBI LIANNE · 2022 to 2024
$747k
Functional genetic basis of Wolbachia-Drosophila endosymbiosisR35GM157189 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Shelbi Lianne Russell · 2025 to 2026
$584k
HHS | NIH | National Institute of General Medical Sciences (NIGMS) R00GM135583HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM128932NHGRI NIH HHS T32 HG012344NIGMS NIH HHS R00 GM135583NIGMS NIH HHS R35 GM128932NIGMS NIH HHS R35 GM157189NSF | NSF Graduate Research Fellowship Program (GRFP) GRFP
6 · The paper itself

Abstract

Since the discovery of spliceosomal introns in eukaryotic genomes, the proximate molecular and evolutionary processes that generate new introns have remained a critical mystery. Specialized transposable elements (TEs), introners, are thought to be one of the major drivers of intron gain in diverse eukaryotes. However, the molecular mechanism(s) and evolutionary processes driving introner propagation within and between lineages remain elusive. Here, we analyze 8,716 genomes, revealing 1,093 introner families in 201 species spanning 1.7 billion years of evolution. Introners are derived from functionally diverse TEs including families of terminal-inverted-repeat DNA TEs, retrotransposons, cryptons, and helitrons as well as mobile elements with unknown molecular mechanisms. We identify eight cases where introners recently transferred between divergent host species and show that giant viruses that integrate into genomes may facilitate introner transfer across lineages. We propose that ongoing intron gain is primarily a consequence of TE activity in eukaryotes, thereby resolving a key mystery of genome structure evolution.

Indexed as

DNA Transposable ElementsEvolution, MolecularGene Transfer, HorizontalIntronsAnimalsEukaryotaGenomeHumansPhylogenyRetroelementsDNA Transposable ElementsRetroelementsgenome evolutionintronerintron gaintransposable elements

Identifiers

PMID40402243
PMCPMC12130899

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.