Evidence map›Paper›PMID 40399934›Full record

ArticleGenome biology2025

Revealing long-range heterogeneous organization of nucleoproteins with 6mA footprinting by ipdTrimming.

Wentao Yang, Xue Qing Wang, Fan Wei, Jingqi Yu, Yifan Liu, Yali Dou

Abstract read
In one paragraph

Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Wentao YangDepartment of Cancer Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA.
Xue Qing WangDepartment of Cancer Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA.
Fan WeiDepartment of Cancer Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA.
Jingqi YuDepartment of Cancer Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA.
Yifan LiuDepartment of Cancer Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA. Yifan.Liu@med.usc.edu.
Yali DouDepartment of Cancer Biology, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA. Yalidou@usc.edu.

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Fumito Ito · 1985 to 2026
$181.4M
National Science Foundation MCB-2435178NCI NIH HHS P30 CA014089NIH HHS P30 CA014089
6 · The paper itself

Abstract

Enabled by long-read sequencing technologies, particularly Single Molecule, Real-Time sequencing, N

Indexed as

AdenineDNA FootprintingNucleoproteinsDNA, MitochondrialHumansNucleosomesTranscription FactorsAdenineDNA, MitochondrialNucleoproteinsNucleosomesTranscription Factors

Identifiers

PMID40399934
PMCPMC12096735

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.