Evidence map›Paper›PMID 40399783›Full record

ArticleBMC genomics2025

Comprehensive analysis of Brassica napus Glycosyl hydrolase family 1 genes and functional analysis of BnaBGLU27.C08 in clubroot resistance.

Yiji Shi, Xiang Liu, Shunjun Bao, Ye Li, Yuqing Shi, Chen Liang, Hongyu Sha, Zihao Yu, Qing Su, Xiyu Zhang and 5 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Yiji ShiState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xiang LiuState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Shunjun BaoState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Ye LiState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Yuqing ShiState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Chen LiangState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Hongyu ShaState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Zihao YuState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Qing SuState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xiyu ZhangState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Xiaoyan LiState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Weinan SunState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Chengyu YuState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China.
Keqi LiState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China. likeqi@nwafu.edu.cn.
Zhen HuangState Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China. huang_zhen.8@nwafu.edu.cn.

Funding

the Key Research and Development Plan of Shaanxi Province 2023-YBNY-020the Key Research and Development Project of Shaanxi Province 2024NC2-GJHX-17the National Key Research and Development Program 2022YFD1200400
6 · The paper itself

Abstract

backgroundβ-Glycosidases (BGLUs), belonging to the Glycoside Hydrolase Family 1 (GH1), play crucial roles in plant growth, development, and stress adaptation. While BGLUs have been extensively characterized in various plants, a comprehensive analysis of the BGLU family in Brassica napus has yet to be conducted.

resultsIn this study, we identified 131 BnaBGLU genes in B. napus and classified them into 11 subfamilies. Gene duplication analysis revealed that the expansion of the BnaBGLU family primarily resulted from segmental duplications. Structural analysis revealed high conservation within subfamilies, while promoter cis-element profiling and transcriptional studies under phytohormone treatments and abiotic stresses demonstrated BnaBGLUs respond to diverse environmental stimuli. Additionally, BnaBGLUs exhibit tissue-specific expression patterns. Notably, BnaBGLU27.C08 was significantly upregulated 96 h post-inoculation with Plasmodiophora brassicae in the root of clubroot-resistant (CR) B. napus varieties. Furthermore, overexpression of BnaBGLU27.C08 in Arabidopsis significantly enhanced resistance to clubroot disease.

conclusionsThese findings establish a foundation for further investigation on the BnaBGLU family in B. napus and offer potential candidate genes for breeding CR B. napus varieties.

Indexed as

Brassica napusDisease ResistanceGlycoside HydrolasesPlant DiseasesPlant ProteinsArabidopsisGene DuplicationGene Expression ProfilingGene Expression Regulation, PlantMultigene FamilyPhylogenyPlasmodiophoridaPromoter Regions, GeneticStress, PhysiologicalGlycoside HydrolasesPlant ProteinsBGLUsBrassica napusClubrootGenome-wide

Identifiers

PMID40399783
PMCPMC12093868

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.