Evidence map›Paper›PMID 40399485›Full record

ArticleJournal of medical systems2025

From Admission to Discharge: Leveraging NLP for Upstream Primary Coding with SNOMED CT.

Elisa Asensio Blasco, Xavier Borrat Frigola, Xavier Pastor Duran, Artur Conesa González, Narcís Macià, David Sánchez Barcenilla, Ricardo Garrido Bejar, Santiago Frid

Abstract read
In one paragraph

Article in Journal of medical systems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Elisa Asensio BlascoClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0009-0004-5431-853X
Xavier Borrat FrigolaClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-9348-9284
Xavier Pastor DuranClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0001-8267-7151
Artur Conesa GonzálezClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-4268-3861
Narcís MaciàClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0009-0008-8966-9013
David Sánchez BarcenillaClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain.ORCID http://orcid.org/0009-0004-1309-1199
Ricardo Garrido BejarIT Department, Hospital Clínic de Barcelona, Barcelona, Spain.
Santiago FridClinical Informatics Service, Hospital Clínic de Barcelona, Barcelona, Spain. frid@clinic.cat.ORCID http://orcid.org/0000-0001-8400-5770

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study aims to describe implementing a SNOMED CT-coded health problem (HP) list at Hospital Clínic de Barcelona. The project focuses on enhancing the accuracy and efficiency of clinical coding by automating the process from patient admission, while simultaneously enabling the reuse of coded data for research and management purposes. SNOMED CT was selected as the reference terminology for recording HPs. A subset of terms (our Health Problems Catalogue -HPC-) was created to meet local needs. An NLP tool was integrated into the clinical workstation to assist in primary coding HPs from natural language inputs. The system architecture included four servers (Coder, Reviewer, Manager, and Terminology Server) supporting real-time coding and review processes. Clinical and operational data from April to October 2024 were analyzed to evaluate the system's performance. Between April 9 and October 4, 2024, a total of 118,534 HPs were recorded. Of these, 74.2% were coded in real-time using the NLP tool, 23.3% were coded by documentation specialists, and 2.5% remained uncoded. The system significantly reduced coding delays and enriched the institutional data warehouse, facilitating real-time research and management activities. Implementing a SNOMED CT-coded HP list supported by NLP and terminology services improved coding accuracy and clinician efficiency. This system enhances clinical understanding, enables evidence-based recommendations, and supports data-driven decision-making in healthcare management and research. Clinical Trial Number Not applicable.

Indexed as

Clinical CodingNatural Language ProcessingPatient AdmissionPatient DischargeSystematized Nomenclature of MedicineElectronic Health RecordsHumansSpain

Identifiers

PMID40399485
PMCPMC12095342

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.