Evidence map›Paper›PMID 40399382›Full record

ArticleNature communications2025

Multiomic analysis of human kidney disease identifies a tractable inflammatory and pro-fibrotic tubular cell phenotype.

Maximilian Reck, David P Baird, Stefan Veizades, Callum Sutherland, Rachel M B Bell, Heeyoun Hur, Carolynn Cairns, Piotr P Janas, Ross Campbell, Andy Nam and 13 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Maximilian Reck *Centre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0001-8829-5031
David P Baird *Centre for Inflammation Research, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-6338-3788
Stefan VeizadesCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-3829-3537
Callum SutherlandCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
Rachel M B BellCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
Heeyoun HurCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
Carolynn CairnsCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
Piotr P JanasCentre for Inflammation Research, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0001-5422-258X
Ross CampbellCentre for Inflammation Research, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-2298-9887
Andy NamBruker Spatial Biology, Seattle, WA, USA.ORCID http://orcid.org/0000-0003-1857-2245
Wei YangBruker Spatial Biology, Seattle, WA, USA.
Nathan SchurmanBruker Spatial Biology, Seattle, WA, USA.ORCID http://orcid.org/0009-0005-4834-4704
Claire WilliamsBruker Spatial Biology, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-5467-149X
Eoin O'SullivanInstitute of Molecular Bioscience, University of Queensland, Brisbane, QLD, Australia.ORCID http://orcid.org/0000-0002-7709-6595
Meryam BeniazzaInstitute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK.
Andrea CorsinottiInstitute for Regeneration and Repair, University of Edinburgh, Edinburgh, UK.
Christopher BellamyCentre for Inflammation Research, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-4097-4080
Jeremy HughesCentre for Inflammation Research, University of Edinburgh, Edinburgh, UK.
Alexander LairdInstitute of Genetics and Cancer, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-7296-025X
Laura DenbyCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
Tamir ChandraMRC Human Genetics Unit, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-7935-317X
David A FerenbachCentre for Inflammation Research, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-9202-1428
Bryan R ConwayCentre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK. bryan.conway@ed.ac.uk.ORCID http://orcid.org/0000-0002-2888-9249

Funding

American Heart Association (American Heart Association, Inc.) 967503Kidney Research UK 024_20190306; RP_013_20221129Kidney Research UK SF_001_20181122RCUK | Medical Research Council (MRC) MR/N013166/1RCUK | Medical Research Council (MRC) MR/W00089X/1RCUK | Medical Research Council (MRC) MR/W030322/1
6 · The paper itself

Abstract

Maladaptive proximal tubular (PT) epithelial cells have been implicated in progression of chronic kidney disease (CKD), however the complexity of epithelial cell states within the fibrotic niche remains incompletely understood. Hence, we integrated snRNA and ATAC-seq with high-plex single-cell molecular imaging to generate a spatially-revolved multiomic atlas of human kidney disease. We demonstrate that in injured kidneys, a subset of HAVCR1

Indexed as

Kidney Tubules, ProximalRenal Insufficiency, ChronicAnimalsDisease Models, AnimalEpithelial CellsFemaleFibrosisHepatitis A Virus Cellular Receptor 1HumansInflammationIntercellular Adhesion Molecule-1MaleMiceMice, Inbred C57BLNF-kappa BPhenotypeHAVCR1 protein, humanHepatitis A Virus Cellular Receptor 1ICAM1 protein, humanIntercellular Adhesion Molecule-1NF-kappa BTranscription Factor AP-1Vascular Cell Adhesion Molecule-1

Identifiers

PMID40399382
PMCPMC12095627

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.