ArticleScientific data2025
Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar.
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10 citing papers in PubMed.
- Bycatch in a bottle: what taxa are recoverable from metabarcoding DNA in historical invertebrate collection preservative fluid?The Journal of heredity · 2026Article
- Comparison of Environmental DNA and Bulk DNA Metabarcoding for Assessing Terrestrial Arthropod Diversity Across Three Habitat Types on Guam.Molecular ecology resources · 2026Article
- Assessing the temporal dynamics of airborne insect communities through DNA metabarcoding of aerial trap catches.Scientific reports · 2026Article
- Spatial overlap and temporal synchrony between guilds of insect hosts and parasitoids.The Journal of animal ecology · 2026Article
- Accuracy of occurrence and abundance estimates from insect metabarcoding.bioRxiv : the preprint server for biology · 2026Article
- Lidar reveals distinct insect daily activity and diversity between habitats.Scientific reports · 2025Article
- HAPP: High-accuracy pipeline for processing deep metabarcoding data.PLoS computational biology · 2025Article
- Small Bugs, Big Data: Metagenomics for Arthropod Biodiversity Monitoring.Ecology and evolution · 2025Article
- High-throughput biodiversity surveying sheds new light on the brightest of insect taxa.Proceedings. Biological sciences · 2025Article
- Machine vision-based detection method for key phenotypic information of shiitake mushroom stipes.Frontiers in plant science · 2025Article
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Authors and funding
87 authors.
A Miraldo *Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden. andreia.miraldo@gmail.com.ORCID http://orcid.org/0000-0001-6107-006X
J Sundh *Department of Biochemistry and Biophysics, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Stockholm University, Box 1031, SE, 17121, Solna, Sweden.ORCID http://orcid.org/0000-0003-3053-9392
E Iwaszkiewicz-EggebrechtDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.
M BuczekInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, ul. Gronostajowa 7, PL, 30387, Kraków, Poland.
R GoodsellDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.
H JohanssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
B L FisherCalifornia Academy of Sciences, San Francisco, CA, 94118, USA.ORCID http://orcid.org/0000-0002-4653-3270
D RaharinjanaharyMadagascar Biodiversity Center, Antananarivo, 101, Madagascar.
E T RajoelisonMadagascar Biodiversity Center, Antananarivo, 101, Madagascar.
C RanaivoMadagascar Biodiversity Center, Antananarivo, 101, Madagascar.
C RandrianandrasanaMadagascar Biodiversity Center, Antananarivo, 101, Madagascar.
J-J RafanomezantsoaMadagascar Biodiversity Center, Antananarivo, 101, Madagascar.
L ManoharanNational Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab, Department of Laboratory Medicine, Lund University, Lund, Sweden.
E GranqvistDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-1513-1674
L J A van DijkDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.
L AlbergStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
D ÅhlénDepartment of Ecology, Environment and Plant Sciences, Stockholm University, SE, 10691, Stockholm, Sweden.
M AspeboStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
S ÅströmStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A BellvikenStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
P-E BergmanStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
S BjörklundStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
M P BjörkmanDepartment of Biological and Environmental Sciences, University of Gothenburg, Box 463, SE, 40530, Gothenburg, Sweden.ORCID http://orcid.org/0000-0001-5768-1976
J DengInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, ul. Gronostajowa 7, PL, 30387, Kraków, Poland.
L DesboroughStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
E DolffStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A EliassonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
H ElmquistStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
H EmanuelssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
R ErixonUniversity of Skövde, Högskolevägen 1, SE, 54128, Skövde, Sweden.
L FahlenStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
C FrognerStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
P FürstStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A GrabsStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
H GruddSwedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapensväg 38, SE, 98107, Abisko, Sweden.ORCID http://orcid.org/0000-0002-9033-2505
D GuasconiDepartment of Physical Geography, Stockholm University, Svante Arrhenius väg 8, SE, 10691, Stockholm, Sweden.
M GunnarssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
S HäggqvistStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A HedStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
E HörnströmStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
H JohanssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A JönssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
S KanerotStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A KarlssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
D KarlssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.ORCID http://orcid.org/0000-0003-4639-823X
M KlinthStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
T KraftStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.ORCID http://orcid.org/0000-0002-1143-5494
R LahtiTornedalens Folkhögskola, Matarengivägen 24 G, SE, 95731, Övertorneå, Sweden.
M LarssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
H LernefalkStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
Y LestanderStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
L-T LindholmStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
M LindholmStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
U LjungStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
K LjungStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
J LundbergDepartment of Botany, Swedish Museum of Natural History, PO Box 5007, SE, 10405, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-4316-9183
E LundinSwedish Polar Research Secretariat, Abisko Scientific Research Station, Vetenskapensväg 38, SE, 98107, Abisko, Sweden.ORCID http://orcid.org/0000-0002-3785-8305
M MalmeniusStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
D MarquinaDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.
J MartinelliStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
L MertzStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
J NilssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A PatchettDepartment of Earth Sciences, University of Gothenburg, SE, 40530, Gothenburg, Sweden.
N PerssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
J PerssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
M Prus-FrankowskaInstitute of Environmental Sciences, Faculty of Biology, Jagiellonian University, ul. Gronostajowa 7, PL, 30387, Kraków, Poland.
E RegazzoniStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
K-G RosanderStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
M RydgårdStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
C SandblomStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
J SkordStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
T StålhandskeDepartment of Earth Sciences, University of Gothenburg, SE, 40530, Gothenburg, Sweden.
F SvenssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
S SzpryngielDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-2965-2873
K TajaniLänsstyrelsen Jämtland, SE, 83186, Östersund, Sweden.
M TyboniStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
C UgarphStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
L VestermarkStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
J VilhelmssonStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
N WahlgrenStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
A WassStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
P WetterstrandStation Linné, Ölands Skogsby 161, SE, 38693, Färjestaden, Sweden.
P ŁukasikDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-4164-6487
A J M TackDepartment of Ecology, Environment and Plant Sciences, Stockholm University, SE, 10691, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-3550-1070
A F AnderssonScience for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-3627-6899
T RoslinDepartment of Ecology, Swedish University of Agricultural Sciences (SLU), Ulls väg 18B, Uppsala, 75651, Sweden.ORCID http://orcid.org/0000-0002-2957-4791
F RonquistDepartment of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE, 10405, Stockholm, Sweden.
Funding
Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 2017.088
Abstract
We present the data from the Insect Biome Atlas project (IBA), characterizing the terrestrial arthropod faunas of Sweden and Madagascar. Over 12 months, Malaise trap samples were collected weekly (biweekly or monthly in the winter, when feasible) at 203 locations within 100 sites in Sweden and weekly at 50 locations within 33 sites in Madagascar; this was complemented by soil and litter samples from each site. The field samples comprise 4,749 Malaise trap, 192 soil and 192 litter samples from Sweden and 2,566 Malaise trap and 190 litter samples from Madagascar. Samples were processed using mild lysis or homogenization, followed by DNA metabarcoding of CO1 (418 bp). The data comprise 698,378 non-chimeric sequence variants from Sweden and 687,866 from Madagascar, representing 33,989 (33,046 Arthropoda) and 77,599 (77,380 Arthropoda) operational taxonomic units, respectively. These are the most comprehensive data presented on these faunas so far, allowing unique analyses of the size, composition, spatial turnover and seasonal dynamics of the sampled communities. They also provide an invaluable baseline against which to gauge future changes.
Indexed as
ArthropodsInsectaAnimalsDNA Barcoding, TaxonomicEcosystemMadagascarSweden
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