Evidence map›Paper›PMID 40397674›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Activation dynamics of ubiquitin-specific protease 7.

Gabrielle J Valles, Emilie J Korchak, Dane H Geddes-Buehre, Nancy Jaiswal, Dmitry M Korzhnev, Irina Bezsonova

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Gabrielle J Valles *Department of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06032.
Emilie J Korchak *Department of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06032.ORCID 0000-0002-6091-8636
Dane H Geddes-BuehreDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06032.
Nancy JaiswalDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06032.
Dmitry M KorzhnevDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06032.ORCID 0000-0002-3556-2447
Irina BezsonovaDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, CT 06032.ORCID 0000-0002-8629-0349

Funding

TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
UBIQUITIN-PROTEASOME PATHWAY IN CANCERR35GM128864 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BEZSONOVA, IRINA · 2018 to 2022
$1.6M
UBIQUITIN-PROTEASOME PATHWAY in HUMAN DISEASER35GM156397 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI Irina Bezsonova · 2025 to 2026
$1000k
Understanding the effect of Hao-Fountain syndrome-causing mutations on neuronal developmentR21NS135343 · NINDS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI BEZSONOVA, IRINA, O'NEIL, ALISON LINSLEY · 2024 to 2024
$462k
Foundation for USP7-related Diseases AG20220444HHS | NIH | National Institute of General Medical Sciences (NIGMS) 1R35GM156397HHS | NIH | National Institute of General Medical Sciences (NIGMS) R35GM128864HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R21NS135343NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R35 GM128864NIGMS NIH HHS R35 GM156397NINDS NIH HHS R21 NS135343UCONN Foundation 23912
6 · The paper itself

Abstract

Ubiquitin-specific protease 7 (USP7) is a deubiquitinating enzyme that plays a crucial role in cellular processes, including the maintenance of genome stability and regulation of antiviral and immune responses. Its dysfunction is linked to various cancers and neurodevelopmental disorders such as Hao-Fountain syndrome. Unlike other USP-family enzymes, the triad of catalytic residues in USP7 adopts an inactive conformation and undergoes rearrangement into the active state upon substrate binding. Despite its potential importance for regulating the enzyme's activity, the dynamics of USP7 have not been explored. In this study, we combine advanced CPMG NMR relaxation dispersion measurements with the analysis of enzyme kinetics to investigate the conformational dynamics of USP7 in solution and its role in enzyme activation. Our results suggest that apo-USP7 exists in a dynamic equilibrium, transiently switching between inactive and low-populated active conformations, indicating that enzyme activation can occur spontaneously, even in the absence of a substrate. Furthermore, we show that the Hao-Fountain syndrome-associated variant G392D enhances the conformational dynamics of the enzyme, leading to a significant increase in its catalytic activity. This study captures the sparsely populated, "invisible" active conformation of USP7 and demonstrates how changes in enzyme dynamics can contribute to activity, offering broader insights into enzyme function and disease mechanisms.

Indexed as

Ubiquitin-Specific Peptidase 7Catalytic DomainEnzyme ActivationHumansKineticsProtein ConformationSubstrate SpecificityUbiquitin-Specific Peptidase 7USP7 protein, humandeubiquitinationenzyme activationenzyme dynamicsNMR relaxation dispersionUSP7

Identifiers

PMID40397674
PMCPMC12130818

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.