Evidence map›Paper›PMID 40395613›Full record

ArticleVirus evolution2025

Spatiotemporal dispersion of DENV-1 genotype V in Western Colombia.

Diana Rojas-Gallardo, Tyshawn Ferrell, Paula M Escobar-Pereira, Diego Lopez, Beatriz Giraldo, Juliana Restrepo-Chica, Erika Jimenez-Posada, Marlen Martinez-Gutierrez, Julian Ruiz-Sáenz, Autum Key and 10 more

Abstract read
In one paragraph

Article in Virus evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Diana Rojas-GallardoPopulation Biology, Ecology and Evolution Graduate Program, Emory University, 201 Dowman Drive, Atlanta, GA 30322, United States.ORCID https://orcid.org/0000-0002-7902-2231
Tyshawn FerrellBiochemistry, Cell, and Developmental Biology Graduate Program, Emory University, 201 Dowman Drive, Atlanta, GA 30322, United States.
Paula M Escobar-PereiraGrupo de Investigación Biomedicina, Facultad de Medicina, Institución Universitaria Visión de las Américas, Avenida de las Américas No 98-56 Sector Belmonte, Pereira, Risaralda 660000, Colombia.
Diego LopezGrupo de Investigación GIECSA Research Group, Faculty of Health Sciences, Unidad Central del Valle del Cauca (UCEVAValle del Cauca), Carrera 27A, Salida Sur # 48 -144, Tuluá, Valle del Cauca 763021, Colombia.
Beatriz GiraldoGrupo de Investigación Biomedicina, Facultad de Medicina, Institución Universitaria Visión de las Américas, Avenida de las Américas No 98-56 Sector Belmonte, Pereira, Risaralda 660000, Colombia.
Juliana Restrepo-ChicaGrupo de Investigacion en Infecciones Emergentes y Medicina Tropical, Instituto para la investigación en Ciencias Biomédicas-Sci-help, Carrera 37 B 36-05, Torre 1 401, Pereira, Risaralda 660000, Colombia.
Erika Jimenez-PosadaGrupo de Investigacion en Infecciones Emergentes y Medicina Tropical, Instituto para la investigación en Ciencias Biomédicas-Sci-help, Carrera 37 B 36-05, Torre 1 401, Pereira, Risaralda 660000, Colombia.ORCID https://orcid.org/0000-0002-3737-9427
Marlen Martinez-GutierrezGrupo de Investigación en Ciencias Animales, Universidad Cooperativa de Colombia, Cl 30 A #33-51, Bucaramanga, Santander 680005, Colombia.
Julian Ruiz-SáenzGrupo de Investigación en Ciencias Animales, Universidad Cooperativa de Colombia, Cl 30 A #33-51, Bucaramanga, Santander 680005, Colombia.ORCID https://orcid.org/0000-0002-1447-1458
Autum KeyDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.
Nima ShariatzadehDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.
Dara KhosraviDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.
Megan A MartinezDepartment of Microbiology and Immunology, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.ORCID https://orcid.org/0000-0001-7657-5052
Andrei BombinDivision of Infectious Diseases, Department of Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.
Jesse J WaggonerDivision of Infectious Diseases, Department of Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.
Jorge E OsorioDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, 2015 Linden Drive, Madison, WI 53706, United States.
Christopher J NeufeldtDepartment of Microbiology and Immunology, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.ORCID https://orcid.org/0000-0002-4551-1811
Matthew H CollinsDivision of Infectious Diseases, Department of Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.
Jaime A Cardona-OspinaGrupo de Investigación Biomedicina, Facultad de Medicina, Institución Universitaria Visión de las Américas, Avenida de las Américas No 98-56 Sector Belmonte, Pereira, Risaralda 660000, Colombia.ORCID https://orcid.org/0000-0003-3996-2293
Anne PiantadosiDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, 100 Woodruff Circle, Atlanta, GA 30322, United States.ORCID https://orcid.org/0000-0002-5942-1534

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue virus (DENV) is a significant public health concern in Colombia, with increased transmission of DENV type 1 (DENV-1) in the departments of Risaralda and Valle del Cauca in the Central-West region of the country following a large outbreak in 2019. However, little is known about the source, genetic diversity, and evolution of circulating viruses. We obtained serum samples from individuals with acute DENV infection and analysed DENV-1 genetic diversity, phylodynamics, and phylogeography. We found that most viruses belonged to DENV-1 genotype V, and phylogenetic analysis revealed three distinct clades, each of which was most closely related to viruses from neighbouring departments of Colombia sampled over the last 5-10 years. Thus, the 2019 outbreak and subsequent DENV-1 circulation was not due to the introduction of a new lineage to the country but rather reflected local DENV-1 V dispersion and evolution. We identified amino acid positions under positive selection in structural proteins and NS1, which may have a role in immune evasion and pathogenesis. Overall, our analysis of DENV-1 V diversity, evolution, and spread within Colombia highlights the important role of genomic surveillance in understanding virus dynamics during endemic circulation and outbreaks.

Indexed as

ColombiaDENV-1Vgenetic diversityphylogenetic analysisspatiotemporal dispersion

Identifiers

PMID40395613
PMCPMC12091148

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.