Evidence map›Paper›PMID 40391895›Full record

ArticlemBio2025

Microbial vitamin biosynthesis links gut microbiota dynamics to chemotherapy toxicity.

Lars E Hillege, Kai R Trepka, Benjamin G H Guthrie, Xueyan Fu, Romy Aarnoutse, Maia R Paymar, Christine Olson, Chen Zhang, Edwin Ortega, Lorenzo Ramirez and 12 more

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Lars E Hillege *GROW-Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Limburg, the Netherlands.
Kai R Trepka *Department of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.ORCID 0000-0002-8672-6317
Benjamin G H GuthrieDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.
Xueyan FuUSDA Human Nutrition Research Center on Aging, Tufts University, Medford, Massachusetts, USA.
Romy AarnoutseGROW-Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Limburg, the Netherlands.
Maia R PaymarUSDA Human Nutrition Research Center on Aging, Tufts University, Medford, Massachusetts, USA.
Christine OlsonDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.
Chen ZhangDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.
Edwin OrtegaDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.
Lorenzo RamirezDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.
Judith de Vos-GeelenGROW-Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Limburg, the Netherlands.
Liselot Valkenburg-van IerselGROW-Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Limburg, the Netherlands.
Irene E G van HellemondDepartment of Medical Oncology, Catharina Hospital, Eindhoven, North Brabant, the Netherlands.
Arnold BaarsDepartment of Medical Oncology, Hospital Gelderse Vallei, Ede, Gelderland, the Netherlands.
Johanna H M J VestjensDepartment of Internal Medicine, VieCuri Medical Centre, Venlo, Limburg, the Netherlands.
John PendersNUTRIM-Institute of Nutrition and Translational Research in Metabolism, Maastricht University, Maastricht, Limburg, the Netherlands.
Adam DeutschbauerEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Chloe E AtreyaDepartment of Medicine, University of California San Francisco, San Francisco, California, USA.
Wesley A KidderDepartment of Medicine, University of California San Francisco, San Francisco, California, USA.
Marjolein L SmidtGROW-Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Limburg, the Netherlands.
Janine Ziemons *GROW-Research Institute for Oncology and Reproduction, Maastricht University, Maastricht, Limburg, the Netherlands.ORCID 0000-0002-4559-5488
Peter J Turnbaugh *Department of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA.ORCID 0000-0002-0888-2875

Funding

Medical Scientist Training Program (T32 NRSA Training Grant)T32GM141323 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Aimee Kao · 2021 to 2026
$10.5M
Predicting and preventing drug metabolism by the human gut microbiomeR01HL122593 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Peter James Turnbaugh · 2016 to 2026
$5.7M
Metabolism of cancer chemotherapeutics by the human gut microbiomeR01CA255116 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Peter James Turnbaugh · 2023 to 2026
$3.1M
Host-microbiome interactions shape the metabolic effects of ketogenic dietsR01DK114034 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TURNBAUGH, PETER JAMES · 2020 to 2024
$2.5M
NCI NIH HHS R01 CA255116NCI NIH HHS R01CA255116NHLBI NIH HHS R01 HL122593NHLBI NIH HHS R01HL122593NIDDK NIH HHS R01 DK114034NIDDK NIH HHS R01DK114034NIGMS NIH HHS T32 GM141323U.S. Department of Agriculture 58-8050-3-003
6 · The paper itself

Abstract

Dose-limiting toxicities pose a major barrier to cancer treatment. While preclinical studies show that the gut microbiota influences and is influenced by anticancer drugs, data from patients paired with careful side effect monitoring remains limited. Here, we investigate capecitabine (CAP)-microbiome interactions through longitudinal metagenomic sequencing of stool from 56 advanced colorectal cancer patients. CAP significantly altered the gut microbiome, enriching for menaquinol (vitamin K2) biosynthesis genes. Transposon library screens, targeted gene deletions, and media supplementation revealed that menaquinol biosynthesis protects

Indexed as

Antineoplastic AgentsCapecitabineColorectal NeoplasmsGastrointestinal MicrobiomeVitamin K 2VitaminsBacteriaEscherichia coliFecesFemaleHumansMaleMetagenomicsMiddle AgedAntineoplastic AgentsCapecitabineVitamin K 2Vitaminschemotherapycolorectal cancerhuman gut microbiomemetagenomicsvitamin K

Identifiers

PMID40391895
PMCPMC12153289

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.