Evidence map›Paper›PMID 40389879›Full record

ArticleBMC microbiology2025

Mycobacteroides abscessus subspecies: a comparative genomic analysis reveals unique metabolic activities and drug resistance patterns.

Xiaoyu Wang, Yongdong Dai, Xiao Wang, Lingfei Li, Yanhai Feng, Shunying Liu, Zhenyu Kou, Liang Wang, Fangjie Wang, Yaokai Chen and 1 more

Abstract readComparative Study
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xiaoyu WangDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Yongdong DaiShanghai Majorbio Bio-Pharm Technology Co. Ltd, Shanghai, 200120, China.
Xiao WangDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Lingfei LiDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Yanhai FengDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Shunying LiuDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Zhenyu KouDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Liang WangDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China.
Fangjie WangThe First Research Department, State Key Laboratory of Trauma, Burns and Combined Injury, Daping Hospital, Army Medical University, (Third Military Medical University), Chongqing, 400042, China.
Yaokai ChenDepartment of Infectious Diseases, Chongqing Public Health Medical Center, 109 Baoyu Road, Shapingba District, Chongqing, 400036, China. yaokaichen@hotmail.com.
Xia LeiDepartment of Dermatology, Daping Hospital, Army Medical University (Third Military Medical University), No.10, Yangtze River Branch Road, Daping, Yuzhong District, Chongqing, 400042, China. dpyyskinlx@tmmu.edu.cn.

Funding

National Natural Science foundation of China 82473540Open Project of Chongqing Engineering Research Center of Organ Intelligent Bio-Manufacturing CQERC-OIBM20241008Training Program of Talent Innovation Ability in Daping Hospital of Army Medical University ZXZYTSYS06
6 · The paper itself

Abstract

backgroundMycobacteroides abscessus poses a considerable and growing threat to public health due to its resistance against most antibiotics and low cure rate. For a comprehensive understanding of the genomic characteristics and drug resistance mechanisms of M. abscessus, clinical isolates from diverse sources were collected and analyzed.

resultsThe clinical M. abscessus complex analyzed herein primarily comprised two subspecies: Mycobacteroides abscessus subsp. abscessus and Mycobacteroides abscessus subsp. massiliense. Furthermore, comparative genomic and single nucleotide polymorphism analyses revealed distinct metabolic activities among subspecies. Subsequent examination of core hub gene mutations confirmed the presence of distinct metabolic and biosynthetic pathways between M. abscessus subspecies, which may have contributed to their differential drug resistance and may aid in providing targeted interventions. Understanding this subtle genomic variation is crucial for improving treatment strategies and patient outcomes. Additional analyses identified potential novel amikacin and moxifloxacin resistance genes, offering a promising avenue for investigating M. abscessus drug resistance.

conclusionsThrough comparative genomic analysis, we revealed the unique metabolic activities of M. abscessus subsp. abscessus and M. abscessus subsp. massiliense, providing a scientific basis for future diagnostic and personalized management strategies. Identifying possible novel amikacin and moxifloxacin resistance genes within these subspecies offers insights for future drug development efforts and enhances our understanding of the mechanisms underlying M. abscessus drug resistance.

Indexed as

Anti-Bacterial AgentsDrug Resistance, BacterialGenome, BacterialMycobacterium abscessusGenomicsHumansMicrobial Sensitivity TestsMycobacterium Infections, NontuberculousPolymorphism, Single NucleotideAnti-Bacterial AgentsComparative genomicsDrug resistanceMycobacteroides abscessus

Identifiers

PMID40389879
PMCPMC12090666

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.