Evidence map›Paper›PMID 40389618›Full record

ArticleCancer gene therapy2025

Human endogenous retroviruses (HERVs) associated with glioblastoma risk and prognosis.

Harun Mazumder, Hui-Yi Lin, Melody Baddoo, Wojciech Gałan, Diana Polania-Villanueva, Chindo Hicks, David Otohinoyi, Francesca Peruzzi, Zbigniew Madeja, Victoria P Belancio and 3 more

Abstract read
In one paragraph

Article in Cancer gene therapy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Harun MazumderBiostatistics Program, Louisiana State University Health Sciences Center, School of Public Health, New Orleans, LA, USA.
Hui-Yi LinBiostatistics Program, Louisiana State University Health Sciences Center, School of Public Health, New Orleans, LA, USA.
Melody BaddooTulane Cancer Center, Tulane Health Sciences Center, New Orleans, LA, USA.ORCID http://orcid.org/0000-0001-8501-9728
Wojciech Gałan
Diana Polania-VillanuevaStanley S. Scott Cancer Center, Louisiana State University Health Sciences Center, New Orleans, LA, USA.ORCID http://orcid.org/0000-0002-7846-2948
Chindo HicksDepartment of Genetics and the Bioinformatics and Genomics Program, Louisiana State University Health Sciences Center, School of Medicine, New Orleans, LA, USA.
David OtohinoyiDepartment of Genetics and the Bioinformatics and Genomics Program, Louisiana State University Health Sciences Center, School of Medicine, New Orleans, LA, USA.
Francesca PeruzziLouisiana Cancer Research Center, New Orleans, LA, USA.ORCID http://orcid.org/0000-0002-9441-2174
Zbigniew MadejaDepartment of Cell Biology, Jagiellonian University in Kraków, Faculty of Biochemistry, Biophysics and Biotechnology, Kraków, Poland.
Victoria P BelancioLouisiana Cancer Research Center, New Orleans, LA, USA.
Erik K FlemingtonLouisiana Cancer Research Center, New Orleans, LA, USA.
Krzysztof ReissLouisiana Cancer Research Center, New Orleans, LA, USA.
Monika RakLouisiana Cancer Research Center, New Orleans, LA, USA. mrak1@lsuhsc.edu.ORCID http://orcid.org/0000-0003-4746-944X

Funding

Translational Genomics Core (TGC)P20GM121288 · NIGMS · LSU HEALTH SCIENCES CENTER · PI Arunava Roy · 2017 to 2026
$22.4M
Programmed splicing derangement as new EBV host cell shut-off mechanismR01CA262090 · NCI · WAYNE STATE UNIVERSITY · PI ERIK K FLEMINGTON · 2022 to 2026
$2.1M
EBV reactivation causes widespread host de novo promoter transcription and transcriptional interferenceR01CA272142 · NCI · WAYNE STATE UNIVERSITY · PI ERIK K FLEMINGTON · 2022 to 2026
$2.1M
New anti-glioblastoma metabolic compounds with high potential for Blood Brain Barrier penetrationR41CA275433 · NCI · WAYPATH PHARMA LLC · PI REISS, KRZYSZTOF · 2022 to 2022
$225k
NCI NIH HHS R01 CA262090NCI NIH HHS R01 CA272142NCI NIH HHS R41 CA275433NIGMS NIH HHS P20 GM121288U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) P20GM121288
6 · The paper itself

Abstract

Emerging evidence suggests expression from human endogenous retrovirus (HERV) loci likely contributes to, or is a biomarker of, glioblastoma multiforme (GBM) disease progression. However, the relationship between HERV expression and GBM malignant phenotype is unclear. Applying several in silico analyses based on data from The Cancer Genome Atlas (TCGA), we derived a locus-specific HERV transcriptome for glioma that revealed 211 HERVs significantly dysregulated in the comparisons of GBM vs. normal brain (NB), GBM vs. low-grade glioma (LGG), and LGG vs. NB. Our analysis supported development of a unique HERV scoring algorithm that segregated GBM, LGG, and NB. Interestingly, lower HERV scores showed correlation with lower survival in GBM. However, HERV scores were less robust in predicting LGG survival or LGG progression to GBM. Functional prediction analysis linked the 211 HERV loci with 18 voltage-gated potassium channel genes. The functional link between dysregulated HERVs and specific potassium channel genes may contribute to better understanding of GBM pathogenesis, disease progression, and possibly drug resistance.

Indexed as

Brain NeoplasmsEndogenous RetrovirusesGlioblastomaHumansPrognosis

Identifiers

PMID40389618
PMCPMC12183084

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.