Evidence map›Paper›PMID 40387319›Full record

ArticlemBio2025

Exploring protein

Satoshi Nakagawa, Hirokazu Yagi, Tomoki Suyama, Shigeru Shimamura, Saeko Yanaka, Maho Yagi-Utsumi, Shingo Kato, Moriya Ohkuma, Koichi Kato, Ken Takai

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Satoshi NakagawaLaboratory of Marine Environmental Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Kyoto Prefecture, Japan.ORCID 0000-0003-0215-8154
Hirokazu YagiExploratory Research Center on Life and Living Systems (ExCELLS), National Institute of Natural Sciences, Okazaki, Aichi Prefecture, Japan.
Tomoki SuyamaLaboratory of Marine Environmental Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Kyoto, Kyoto Prefecture, Japan.
Shigeru ShimamuraSuper-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa Prefecture, Japan.
Saeko YanakaExploratory Research Center on Life and Living Systems (ExCELLS), National Institute of Natural Sciences, Okazaki, Aichi Prefecture, Japan.
Maho Yagi-UtsumiExploratory Research Center on Life and Living Systems (ExCELLS), National Institute of Natural Sciences, Okazaki, Aichi Prefecture, Japan.
Shingo KatoJapan Collection of Microorganisms (JCM), RIKEN Bioresource Center, Tsukuba, Ibaraki Prefecture, Japan.ORCID 0000-0002-4175-0532
Moriya OhkumaJapan Collection of Microorganisms (JCM), RIKEN Bioresource Center, Tsukuba, Ibaraki Prefecture, Japan.
Koichi KatoExploratory Research Center on Life and Living Systems (ExCELLS), National Institute of Natural Sciences, Okazaki, Aichi Prefecture, Japan.
Ken TakaiSuper-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa Prefecture, Japan.

Funding

Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences 22EXC601Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences 24EXC601Japan Society for the Promotion of Science JP 16H04843Japan Society for the Promotion of Science JP 20H03322Japan Society for the Promotion of Science JP 24H00599Ministry of Education, Culture, Sports, Science and Technology 21-951Ministry of Education, Culture, Sports, Science and Technology JPMXP1323015488
6 · The paper itself

Abstract

Ammonia-oxidizing archaea of the phylum IMPORTANCE: Autotrophic ammonia-oxidizing archaea of the phylum

Indexed as

AmmoniaArchaeaArchaeal ProteinsGlycoproteinsProteomeGlycosylationMembrane GlycoproteinsOxidation-ReductionPolysaccharidesProtein Processing, Post-TranslationalProteomicsAmmoniaArchaeal ProteinsGlycoproteinsMembrane GlycoproteinsPolysaccharidesProteomeS-layer proteinsammonia-oxidizing archaeaglycanNitrososphaerotaS-layerThaumarchaeota

Identifiers

PMID40387319
PMCPMC12153357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.