Evidence map›Paper›PMID 40384779›Full record

ArticleFrontiers in microbiology2025

Unveiling the impact of 16S rRNA gene intergenomic variation on primer design and gut microbiome profiling.

Sirinthorn Sunthornthummas, Rujipat Wasitthankasem, Pimonwan Phokhaphan, Nirinya Sudtachat, Alisa Wilantho, Chumpol Ngamphiw, Wanwisa Chareanchim, Sissades Tongsima

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sirinthorn SunthornthummasNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Rujipat WasitthankasemNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Pimonwan PhokhaphanNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Nirinya SudtachatNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Alisa WilanthoNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Chumpol NgamphiwNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Wanwisa ChareanchimNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Sissades TongsimaNational Biobank of Thailand (NBT), National Center for Genetic Engineering and Biotechnology (BIOTEC), National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The 16S rRNA gene is crucial for bacterial identification, but primer biases and intergenomic variation can compromise its effectiveness, especially in complex ecosystems like the human gut microbiome. This study systematically evaluates 57 commonly used 16S rRNA primer sets through

Indexed as

16S rRNA genegut microbiome profilingintergenomic variationmicrobial communityprimer design

Identifiers

PMID40384779
PMCPMC12081361

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.