Evidence map›Paper›PMID 40382782›Full record

Observational studyJournal of Crohn's & colitis2025

Distinct perturbances in metabolic pathways associate with disease progression in inflammatory bowel disease.

Arno R Bourgonje, Susanne Ibing, Alexandra E Livanos, Danielle Y Ganjian, Carmen Argmann, Bruce E Sands, Marla C Dubinsky, Drew S Helmus, Henrik A Jacobsen, Lone Larsen and 5 more

Abstract readObservational Study
In one paragraph

Observational study in Journal of Crohn's & colitis, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
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  13. American journal of physiology. Gastrointestinal and liver physiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Arno R BourgonjeThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.ORCID 0000-0001-5754-3821
Susanne IbingHasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, 14482 Potsdam, Germany.
Alexandra E LivanosThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.ORCID 0000-0002-8418-3400
Danielle Y GanjianThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.ORCID 0000-0001-6848-4847
Carmen ArgmannDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.ORCID 0000-0002-1110-8012
Bruce E SandsThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.
Marla C DubinskyThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.ORCID 0000-0003-4968-5795
Drew S HelmusThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.
Henrik A JacobsenCenter for Molecular Prediction of Inflammatory Bowel Disease-PREDICT, Department of Clinical Medicine, The Faculty of Medicine, Aalborg University, DK-2450 Copenhagen SV, Denmark.
Lone LarsenCenter for Molecular Prediction of Inflammatory Bowel Disease-PREDICT, Department of Clinical Medicine, The Faculty of Medicine, Aalborg University, DK-2450 Copenhagen SV, Denmark.ORCID 0000-0003-4067-2381
Tine JessCenter for Molecular Prediction of Inflammatory Bowel Disease-PREDICT, Department of Clinical Medicine, The Faculty of Medicine, Aalborg University, DK-2450 Copenhagen SV, Denmark.
Mayte Suarez-FariñasCenter of Biostatistics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.
Bernhard Y RenardHasso Plattner Institute, Digital Engineering Faculty, University of Potsdam, 14482 Potsdam, Germany.ORCID 0000-0003-4589-9809
Jean-Frédéric ColombelThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.
Ryan C UngaroThe Dr. Henry D. Janowitz Division of Gastroenterology, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States.ORCID 0000-0001-8687-3758

Funding

Conduits: Mount Sinai Health System Translational Science HubUL1TR004419 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Rosalind J Wright · 2022 to 2026
$46.4M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
Assessing Predictors of Response to Anti-Tumor Necrosis Alpha Therapy in Early Crohns DiseaseK23DK111995 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI UNGARO, RYAN · 2019 to 2023
$948k
Blood Protein Markers of Biologic Treatment Response in Crohn's DiseaseR03DK132440 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI UNGARO, RYAN · 2023 to 2024
$248k
Clinical and Translational Science Awards (CTSA) UL1TR004419Crohn's and Colitis Foundation Career Development Award 1046760Danish National Research FoundationHasso Plattner FoundationIcahn School of MedicineJoachim Herz FoundationMount Sinai Data Warehouse (MSDW)National Center of Excellence Grant DNRF148NCATS NIH HHS UL1 TR004419Netherlands Organization for Scientific ResearchNIDDK NIH HHS K23 DK111995NIDDK NIH HHS R03 DK132440NIDDK NIH HHS R03 DK132440-01NIH HHS S10 OD026880NIH HHS S10OD026880NWO 452022317Office of Research InfrastructureRubicon FellowshipScientific Computing and Data
6 · The paper itself

Abstract

BACKGROUND AND

aimsPatients with inflammatory bowel disease (IBD) exhibit distinct shifts in circulating metabolite levels linked to disease activity and phenotype, but associations with disease progression remain unexplored. Our aim was to investigate relationships between circulating metabolites and metabolic pathways with disease progression risk in patients with IBD.

methodsWe performed an observational cohort study using the Mount Sinai Crohn's and Colitis Registry. Follow-up data were retrieved from longitudinal electronic health records. Untargeted metabolomic analysis was performed on baseline serum. Disease progression was defined as new systemic steroid or biological prescriptions, IBD-related hospitalization, or surgery. We used multivariable Cox proportional hazards (CoxPH) regression, L1-regularized CoxPH, and Random Survival Forest models to analyze metabolite associations with disease progression risk.

resultsWe studied 1292 metabolites in 277 patients with ulcerative colitis (UC) and 375 patients with Crohn's disease (CD). Over a median follow-up of 2 years, 57.5% experienced disease progression. In CD, 151 metabolites correlated with disease progression (false discovery rate [FDR] < 0.1): 81 (53.6%) associated with higher risk (enriched in amino acids, purine/pyrimidine metabolism, and bile acids) and 70 (46.4%) with lower risk (enriched in fatty acid oxidation, steroid biosynthesis, tryptophan, and antioxidants). In UC, 84 metabolites associated with disease progression (FDR < 0.1): 29 (34.5%) with increased risk (enriched in sphingolipids, hydrogen sulfide, and tyrosine metabolism) and 55 (65.5%) with decreased risk (enriched in steroid biosynthesis, histidine, and phenylalanine metabolism). Survival models incorporating a combination of metabolomic data and clinical parameters outperformed those based solely on clinical variables, including age, sex, disease location, disease behavior, disease extent, current and prior use of biologics, endoscopic disease activity, surgical history, and perianal disease.

conclusionsSpecific metabolites and pathways are associated with disease progression in IBD, highlighting potential prognostic biomarkers and relevant pathways.

Indexed as

Colitis, UlcerativeCrohn DiseaseInflammatory Bowel DiseasesMetabolic Networks and PathwaysAdultBiomarkersDisease ProgressionFemaleHumansMaleMetabolomicsMiddle AgedProportional Hazards ModelsBiomarkersdisease progressioninflammatory bowel diseasemetabolomics

Identifiers

PMID40382782
PMCPMC12148805

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.