Evidence map›Paper›PMID 40382348›Full record

ArticleScientific data2025

Haplotype-resolved chromosomal-level genome assembly of Prunus mahaleb.

Chenlong Fu, Meng Li, Zhuang Zhao, Lixia Yu, Xianrong Wang, Zhuangwei Hou, Zefu Wang

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PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Chenlong Fu *State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, College of Ecology and Environment, Nanjing Forestry University, Nanjing, 210037, China.
Meng Li *College of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.ORCID http://orcid.org/0000-0003-2085-3388
Zhuang ZhaoState Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, College of Ecology and Environment, Nanjing Forestry University, Nanjing, 210037, China.
Lixia YuShanghai Chenshan Botanical Garden, Shanghai, 201602, China.
Xianrong WangCollege of Life Sciences, Nanjing Forestry University, Nanjing, 210037, China.ORCID http://orcid.org/0000-0002-7940-909X
Zhuangwei HouShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China. alfredhou8@gmail.com.ORCID http://orcid.org/0009-0001-6873-3230
Zefu WangState Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, College of Ecology and Environment, Nanjing Forestry University, Nanjing, 210037, China. wangzefu@njfu.edu.cn.ORCID http://orcid.org/0000-0002-5440-4188

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32301411National Natural Science Foundation of China (National Science Foundation of China) 32422053Natural Science Foundation of Jiangsu Province (Jiangsu Provincial Natural Science Foundation) BK20230394
6 · The paper itself

Abstract

Prunus mahaleb is widely utilized as rootstock for cherries in Central Asia due to its exceptional resistance to environmental stressors. In this study, we generated a haplotype-resolved, chromosome-scale genome assembly for P. mahaleb using PacBio HiFi long reads and Hi-C technology. The resulting assembly comprises two haplotypes with sizes of 272.64 Mb (contig N50 = 26.60 Mb) and 271.76 Mb (contig N50 = 30.26 Mb), respectively. We identified 27,965 protein-coding genes (27,627 functionally annotated) and 27,931 protein-coding genes (27,607 functionally annotated) in the two haplotypes, respectively. Additionally, we annotated 145.64 Mb repetitive elements, 2,263 rRNAs, 430 tRNAs, and 780 other non-coding RNAs in haplotype A, and 144.04 Mb repetitive elements, 1,999 rRNAs, 442 tRNAs, and 734 other non-coding RNAs in haplotype B. Further analysis indicated that these haplotypes diverged approximately 2.67 million years ago. This high-quality genome assembly lays a solid groundwork for future initiatives in molecular breeding and functional genomics research for P. mahaleb.

Indexed as

Chromosomes, PlantGenome, PlantHaplotypesPrunus

Identifiers

PMID40382348
PMCPMC12085649

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