Evidence map›Paper›PMID 40382336›Full record

ArticleScientific data2025

Transcriptome data from the interdigital webs of the Chinese Soft-shell Turtle (Pelodiscus sinensis).

Shibin Bai, Shanshan Li, Yining Tang, Ziqiu Jia, Songyang Shang, David M Irwin, Shuyi Zhang, Zhe Wang

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shibin Bai *College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.ORCID http://orcid.org/0000-0002-0218-8524
Shanshan Li *College of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Yining TangCollege of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Ziqiu JiaCollege of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Songyang ShangCollege of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
David M IrwinDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, M5S 1A8, Canada.ORCID http://orcid.org/0000-0001-6131-4933
Shuyi ZhangCollege of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China.
Zhe WangCollege of Animal Science and Veterinary Medicine, Shenyang Agricultural University, Shenyang, 110866, China. zwang@syau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interdigital webs of aquatic tetrapods are a key structure evolved for adaptation, which are formed by inhibiting interdigital cell death (ICD). Diverse interdigital morphologies have independently evolved among species, and the regulatory mechanisms responsible for their development are still not fully understood. The Chinese soft-shell turtle (Pelodiscus sinensis) serves as a good research model that exhibits transitional traits from webless to fully webbed. In this study, we collected eight samples of interdigital webs from the fore- and hindlimbs of turtles at embryonic stage 19 (TK19) for RNA sequencing (RNA-seq) analysis. We identified 608 differentially expressed genes (DEGs). Whole-mount in situ hybridization (WISH) and real-time quantitative PCR (RT-qPCR) of representative genes confirmed the accuracy of the transcriptomic results. These findings not only provide new perspectives and data to support comparative studies of adaptive convergent evolution in aquatic animals but also enhance our understanding of the mechanisms underlying tetrapod limb morphogenesis. Furthermore, these results provide potential molecular targets for research on the plasticity of programmed cell death or senescence.

Indexed as

TranscriptomeTurtlesAnimalsHindlimb

Identifiers

PMID40382336
PMCPMC12085608

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.