Evidence map›Paper›PMID 40380052›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2025

An Overview of miRNA and miRNA Target Analysis Tools.

Aizhan Rakhmetullina, Anna Lukasik, Piotr Zielenkiewicz

Abstract readReview
PubMed Publisher
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Aizhan RakhmetullinaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Anna LukasikInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Piotr ZielenkiewiczInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland. piotr@ibb.waw.pl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNA molecules have been shown to play various significant roles in many physiological and pathophysiological processes in living organisms. The tremendous interest in these molecules has led to the significant development and constant release of a number of computational tools useful for basic as well as advanced miRNA-related analyses. These approaches have various constantly evolving utilities, such as detection, target prediction, functional annotation, and many others. In this chapter, we provide an overview of several computational tools useful for broadly defined plant miRNA analysis. We have added to the Tools4miRs new databases that provide extensive information on small noncoding RNA sequences. Additionally, several tools within the platform have been updated, now featuring comprehensive references and accessible links, ensuring users have access to the most recent and relevant research findings.

Indexed as

Computational BiologyMicroRNAsSoftwareDatabases, GeneticPlantsRNA, PlantMicroRNAsRNA, PlantmiRNA, Analysis, Tools, Bioinformatics, Target gene, Prediction, Tools4miRs

Identifiers

PMID40380052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.