Evidence map›Paper›PMID 40379800›Full record

ArticleNature chemical biology2025

Nuclear ubiquitination permits Hippo-YAP signal for liver development and tumorigenesis.

Jinsong Wei, Zhifa Cao, Qing Li, Xiaoyu Li, Qingzhe Wang, Yiming Zhang, Run Zhang, Xingru Wu, Quanhui Dai, Xinyang Li and 4 more

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Emerging nanomedicine for liver diseases treatment.Journal of nanobiotechnology · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Jinsong Wei *Department of Clinical Laboratory, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai, China.ORCID http://orcid.org/0000-0003-2343-9705
Zhifa Cao *Department of Clinical Laboratory, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai, China.
Qing LiState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.ORCID http://orcid.org/0000-0002-3717-8668
Xiaoyu LiSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China.
Qingzhe WangSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China.
Yiming ZhangSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China.
Run ZhangState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.
Xingru WuSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China.
Quanhui DaiSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China.ORCID http://orcid.org/0009-0005-1628-5172
Xinyang LiSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China.
Zhaocai ZhouState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China.
Fenyong SunDepartment of Clinical Laboratory, Shanghai Tenth People's Hospital, School of Medicine, Tongji University, Shanghai, China.
Shi JiaoState Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, China. jiaoshi@sibcb.ac.cn.ORCID http://orcid.org/0000-0003-3591-8973
Bing ZhaoSchool of Basic Medical Sciences, The First Affiliated Hospital of Nanchang University, Jiangxi Medical College, Nanchang University, Nanchang, China. bingzhao@fudan.edu.cn.ORCID http://orcid.org/0000-0001-9891-3569

Funding

National Natural Science Foundation of China (National Science Foundation of China) 3240050198National Natural Science Foundation of China (National Science Foundation of China) 82372663Natural Science Foundation of Shandong Province (Shandong Provincial Natural Science Foundation) ZR2023LSW008
6 · The paper itself

Abstract

Hippo-YAP signaling is crucial to organ development and tumorigenesis. VGLL4, which occupies TEAD to prevent YAP binding, is the main transcriptional repressor of Hippo-YAP activity. Here we identified the nuclear E3 ligase ubiquitin protein ligase E3 component n-recognin 5 (UBR5) poly-ubiquitinated VGLL4 at Lys61 for its degradation, which permits Hippo-YAP signaling for the development of the liver biliary system in mice and multiple cancers in humans. In mouse liver development, Ubr5 and Vgll4 exhibited reciprocal expression patterns spatiotemporally. Ubr5 deletion impaired cholangiocyte development and hepatocyte reprogramming, which could be efficiently rescued by restoring Hippo-YAP through ablating Vgll4. We also found that the UBR5-VGLL4-YAP axis is associated with the progression of human pan-cancers. Targeting nuclear E3 ligases in multiple types of patient-derived tumor organoids suppressed their expansion. Our identification of UBR5 as the bona fide E3 ligase of VGLL4 offers a molecular framework of nuclear Hippo-YAP regulation and suggests nuclear ubiquitination as a potential therapeutic target for YAP-dependent malignancies.

Indexed as

Cell NucleusCell Transformation, NeoplasticHippo Signaling PathwayLiverLiver NeoplasmsUbiquitinationAnimalsCellular ReprogrammingChromatinDisease ProgressionFemaleHepatocytesHumansMaleMiceProtein BindingChromatinTranscription FactorsUbiquitin-Protein LigasesUBR5 protein, humanUBR5 protein, mouseVGLL4 protein, humanVGLL4 protein, mouseYAP1 protein, humanYAP-Signaling Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.