Evidence map›Paper›PMID 40378850›Full record

ArticleCell genomics2025

Integrative characterization of MYC RNA-binding function.

Sihan Li, Zehua Wang, Xiaofei Wang, Yifei Wang, Dhamotharan Pattarayan, Yu Zhang, Phuong Nguyen, Avishek Bhuniya, Yuang Chen, Haozhe Huang and 8 more

Abstract read
In one paragraph

Article in Cell genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Sihan LiCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Zehua WangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA. Electronic address: zew11@pitt.edu.
Xiaofei WangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Yifei WangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Dhamotharan PattarayanCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Yu ZhangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Phuong NguyenDepartment of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, USA; Department of Bioengineering, Department of Electrical and Computer Engineering, Cancer Center at Illinois, Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Avishek BhuniyaCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Yuang ChenCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Haozhe HuangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Yixian HuangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Luxuan WangDepartment of Pharmaceutical Sciences and Computational Chemical Genomics Screening Center, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, USA.
Junmei WangDepartment of Pharmaceutical Sciences and Computational Chemical Genomics Screening Center, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, USA.
Song LiCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Min ZhangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA.
Yang LiuDepartment of Medicine, University of Pittsburgh, Pittsburgh, PA, USA; UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, USA; Department of Bioengineering, Department of Electrical and Computer Engineering, Cancer Center at Illinois, Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Nara LeeDepartment of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, PA, USA.
Da YangCenter for Pharmacogenetics and Department of Pharmaceutical Sciences, University of Pittsburgh, Pittsburgh, PA, USA; UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, USA; Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, PA, USA. Electronic address: dyang@pitt.edu.

Funding

The Center for Label-free Imagingand Multiscale Biophotonics (CLIMB)P41EB031772 · NIBIB · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Stephen A Boppart · 2022 to 2026
$7.6M
Imaging nanoscale chromatin folding in early carcinogenesisR01CA254112 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LIU, YANG · 2020 to 2025
$2.2M
A novel lncRNA-responsive and xenobiotic receptor-mediated regulation of drug metabolism and dispositionR01CA255196 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YANG, DA · 2021 to 2025
$1.8M
The oncogenic role of EPIC1MYC axis in breast cancerR01CA222274 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI YANG, DA · 2018 to 2022
$1.8M
Enhancer RNAs Boost MYC-Chromatin Interaction to Regulate Gene Expression and TumorigenesisR01CA282704 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Da Yang · 2023 to 2026
$1.6M
LncRNA EPIC1 induces immunotherapy resistance by activating EZH2 in breast cancerR01CA272866 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Da Yang · 2023 to 2026
$1.5M
High-Throughput Computing for Genomics and Bioinformatics ResearchS10OD028483 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEE, ADRIAN V · 2021 to 2021
$574k
NCI NIH HHS R01 CA222274NCI NIH HHS R01 CA254112NCI NIH HHS R01 CA255196NCI NIH HHS R01 CA272866NCI NIH HHS R01 CA282704NIBIB NIH HHS P41 EB031772NIH HHS S10 OD028483
6 · The paper itself

Abstract

Emerging evidence suggests that MYC interacts with RNAs. Here, we performed an integrative characterization of MYC as an RNA-binding protein in six cell lines. We found that MYC binds to a myriad of RNAs with high affinity for guanosine-rich RNAs. Global and specific depletion of RNAs reduces MYC chromatin occupancy. Mechanistically, two highly conserved sequences, amino acids 355-357 KRR and 364-367 RQRR, within the basic region of MYC are necessary for its RNA binding. Notably, alanine substitution of KRR abolishes MYC's RNA-binding ability both in vitro and in vivo, without affecting its ability to bind E-box DNA as part of the MYC:MAX dimer in vitro. The loss of RNA-binding function decreases MYC chromatin binding in vivo and attenuates its ability to promote gene expression, cell-cycle progression, and proliferation. Our study lays a foundation for future investigation into the role of RNAs in MYC-mediated transcriptional activation and oncogenic functions.

Indexed as

Proto-Oncogene Proteins c-mycRNARNA-Binding ProteinsCell CycleCell Line, TumorCell ProliferationChromatinHumansProtein BindingChromatinMYC protein, humanProto-Oncogene Proteins c-mycRNARNA-Binding Proteinsarginine-rich motifCRISPR-DisplayeCLIPenhancer RNAgene regulationguanosine-rich RNAMYCrChIPRNA-binding protein (RBP)TF RNA binding

Identifiers

PMID40378850
PMCPMC12278643

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.