Evidence map›Paper›PMID 40378841›Full record

ArticleCurrent biology : CB2025

Molecular and genetic characterization of sex-linked orange coat color in the domestic cat.

Christopher B Kaelin, Kelly A McGowan, Joshaya C Trotman, Donald C Koroma, Victor A David, Marilyn Menotti-Raymond, Emily C Graff, Anne Schmidt-Küntzel, Elena Oancea, Gregory S Barsh

Abstract read
In one paragraph

Article in Current biology : CB, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. XX/XY Chimerism in Tortoiseshell Tomcats: A New Case and Review of the Literature.Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation · 2026
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Christopher B KaelinDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Kelly A McGowanDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.
Joshaya C TrotmanDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI 02912, USA.
Donald C KoromaDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI 02912, USA.
Victor A DavidLaboratory of Genomic Diversity, National Cancer Institute, Frederick, MD 21701, USA.
Marilyn Menotti-RaymondLaboratory of Genomic Diversity, National Cancer Institute, Frederick, MD 21701, USA.
Emily C GraffDepartment of Pathobiology and Scott-Ritchey Research Center, College of Veterinary Medicine, Auburn University, Auburn, AL 36849, USA.
Anne Schmidt-KüntzelLaboratory of Genomic Diversity, National Cancer Institute, Frederick, MD 21701, USA; Cheetah Conservation Fund, Otjiwarongo, Namibia.
Elena OanceaDepartment of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI 02912, USA.
Gregory S BarshDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA; HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA. Electronic address: gbarsh@stanford.edu.

Funding

Genetic studies of a pleiotropic transmembrane protease: insight from color variation in non-model organismsR01AR082708 · NIAMS · STANFORD UNIVERSITY · PI Gregory Stefan Barsh · 2023 to 2026
$2.6M
Melanocortin signaling: genetic insight from X-linked color mutations in non-model organismsR01AR067925 · NIAMS · HUDSON-ALPHA INSTITUTE FOR BIOTECHNOLOGY · PI BARSH, GREGORY STEFAN · 2015 to 2019
$1.6M
NIAMS NIH HHS R01 AR067925NIAMS NIH HHS R01 AR082708
6 · The paper itself

Abstract

The Sex-linked orange mutation in domestic cats causes variegated patches of reddish/yellow hair and is a defining signature of random X inactivation in female tortoiseshell and calico cats. Unlike the situation for most coat color genes, there is no apparent homolog for Sex-linked orange in other mammals. We show that Sex-linked orange is caused by a 5-kb deletion that leads to ectopic and melanocyte-specific expression of the Rho GTPase Activating Protein 36 (Arhgap36) gene. Single-cell RNA sequencing (RNA-seq) studies from fetal cat skin reveal that red/yellow hair color is caused by reduced expression of melanogenic genes that are normally activated by the melanocortin 1 receptor (Mc1r)-cyclic adenosine monophosphate (cAMP)-protein kinase A (PKA) pathway, but Mc1r and its ability to stimulate cAMP accumulation is intact. Instead, we show that expression of Arhgap36 in melanocytes leads to reduced levels of the PKA catalytic subunit (PKA

Indexed as

GTPase-Activating ProteinsHair ColorAnimalsCatsFemaleMaleMelanocytesReceptor, Melanocortin, Type 1GTPase-Activating ProteinsReceptor, Melanocortin, Type 1calicocoat color geneticsdomestic catmosaicismorangepigment-type switchingtortoiseshellX inactivation

Identifiers

PMID40378841
PMCPMC12187551

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.