Evidence map›Paper›PMID 40376090›Full record

ArticlebioRxiv : the preprint server for biology2025

Widespread discordance between mRNA expression, protein abundance and

Austin Landgraf, Junichi Okada, Maxwell Horton, Li Liu, Shoshana Solomon, Yunping Qiu, Irwin J Kurland, Simone Sidoli, Jeffrey E Pessin, Kosaku Shinoda

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Austin LandgrafDepartment of Molecular Pharmacology, The Albert Einstein College of Medicine, Bronx, NY 10461.
Junichi OkadaDepartment of Medicine (Division of Endocrinology), The Albert Einstein College of Medicine, Bronx, NY 10461.ORCID 0000-0002-2860-5672
Maxwell HortonDepartment of Molecular Pharmacology, The Albert Einstein College of Medicine, Bronx, NY 10461.
Li LiuDepartment of Medicine (Division of Endocrinology), The Albert Einstein College of Medicine, Bronx, NY 10461.
Shoshana SolomonDepartment of Molecular Pharmacology, The Albert Einstein College of Medicine, Bronx, NY 10461.
Yunping QiuDepartment of Medicine (Division of Endocrinology), The Albert Einstein College of Medicine, Bronx, NY 10461.
Irwin J KurlandDepartment of Medicine (Division of Endocrinology), The Albert Einstein College of Medicine, Bronx, NY 10461.
Simone SidoliDepartment of Biochemistry, The Albert Einstein College of Medicine, Bronx, NY 10461.
Jeffrey E PessinDepartment of Molecular Pharmacology, The Albert Einstein College of Medicine, Bronx, NY 10461.
Kosaku ShinodaDepartment of Molecular Pharmacology, The Albert Einstein College of Medicine, Bronx, NY 10461.ORCID 0000-0002-1928-0749

Funding

RESEARCH TRAININGP30DK026687 · NIDDK · ST. LUKE'S-ROOSEVELT INST FOR HLTH SCIS · PI Anthony W Ferrante, DYMPNA GALLAGHER · 1986 to 2026
$33.0M
Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI JEFFREY E. PESSIN · 2015 to 2026
$27.7M
TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
The Mediator complex in the coordinate regulation of lipogenic gene expressionR01DK110063 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ELISCOVICH, CAROLINA INES, PESSIN, JEFFREY E. · 2016 to 2025
$5.9M
Mapping the Developing Beige Fat by Massively Parallel Single Cell AnalysisR00DK110426 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SHINODA, KOSAKU · 2018 to 2020
$747k
Orbitrap Exploris 480 Basic SystemS10OD030286 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SIDOLI, SIMONE · 2021 to 2021
$600k
Mapping the Developing Beige Fat by Massively Parallel Single Cell AnalysisK99DK110426 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHINODA, KOSAKU · 2016 to 2017
$180k
NIDDK NIH HHS K99 DK110426NIDDK NIH HHS P30 DK020541NIDDK NIH HHS P30 DK026687NIDDK NIH HHS R00 DK110426NIDDK NIH HHS R01 DK110063NIGMS NIH HHS T32 GM007491NIH HHS S10 OD030286
6 · The paper itself

Abstract

The mammalian liver plays a critical role in maintaining metabolic homeostasis during fasting and feeding. Liver function is further shaped by sex dimorphism and zonation of hepatocytes. To explore how these factors interact, we performed deep RNA-sequencing and label-free proteomics on periportal and pericentral hepatocytes isolated from male and female mice under fed and starved conditions. We developed a classification system to assess protein-mRNA relationship and found that gene products (mRNA or protein) for most zonation markers showed strong concordance between mRNA and protein. Although classical growth hormone regulated sex-biased gene products also exhibited concordance, ~60% of sex-biased gene products showed protein-level enrichment without corresponding mRNA differences. In contrast, transition between feeding and starvation triggered widespread changes in mRNA expression without significantly affecting protein levels. In particular, key lipogenic mRNAs (e.g.

Identifiers

PMID40376090
PMCPMC12080948

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.