Evidence map›Paper›PMID 40375280›Full record

ArticleBMC research notes2025

Genomic dataset of multidrug-resistant Klebsiella quasipneumoniae from Indonesia.

Nastiti Intan Permata Sari, Putu Yuliandari, Ajeng Kusumaningtyas Pramono, Dwi Tyastuti, Abdul Hadi Furqoni, Fitriana Fitriana, Sunarno Sunarno, Dewi Setyowati, Ni Luh Putu Indi Dharmayanti

Abstract read
In one paragraph

Article in BMC research notes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nastiti Intan Permata SariCenter for Biomedical Research, Research Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.
Putu YuliandariCenter for Biomedical Research, Research Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.
Ajeng Kusumaningtyas PramonoCenter for Biomedical Research, Research Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.
Dwi TyastutiDepartment of Community and Family Medicine, Faculty of Medicine, Universitas Islam Negeri Syarif Hidayatullah, Jakarta, Indonesia.
Abdul Hadi FurqoniCenter for Biomedical Research, Research Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.
Fitriana FitrianaCenter for Biomedical Research, Research Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.
Sunarno SunarnoCenter for Biomedical Research, Research Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.
Dewi SetyowatiMidwifery Study Programme, Faculty of Medicine, Universitas Airlangga, Surabaya, Indonesia. dewi.setyowati@fk.unair.ac.id.
Ni Luh Putu Indi DharmayantiResearch Organization for Health, National Research and Innovation Agency (BRIN), Cibinong Science Centre, Bogor, West Java, Indonesia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesKlebsiella pneumoniae is a free-living bacterium found anywhere, including soil, water, and various types of plants, animals, and humans. Due to identical biochemical test results, Klebsiella quasipneumoniae, a member of the Klebsiella pneumoniae complex, is often misidentified as Klebsiella pneumoniae. This distinct species can be accurately identified solely through whole-genome sequencing. This bacterium poses a significant public health threat due to its increasing antibiotic resistance, ability to cause severe disease, and potential for community-acquired and hospital-acquired infections. However, there was no previous report of K. quasipneumoniae from Indonesia. Subsequent research focusing on antimicrobial-resistant gene analysis, virulence determinants, evolutionary relationship, and transmission pathways based on this dataset will enhance understanding of this species and their differences with other Klebsiella pneumoniae complex organisms. DATA DESCRIPTION: We present a whole genome sequencing of four Klebsiella quasipneumoniae isolated from hospital wastewater in Jakarta, Indonesia. Initial bacterial identification was conducted which showed Klebsiella pneumoniae. However, the whole genome Average Nucleotide Identity (wgANI) was found to be Klebsiella quasipneumoniae. The genome size of Klebsiella quasipneumoniae I1-1, I1-3, I5-2, and I5-3 isolates were 5.4 Mb (GC = 57.72%), 5.5 Mb (GC = 57.72%), 5.4 Mb (GC = 57.73%), and 5.5 Mb (GC = 57.72%), respectively. Sequence data has been deposited in the GenBank database.

Indexed as

Drug Resistance, Multiple, BacterialGenome, BacterialKlebsiellaAnti-Bacterial AgentsHumansIndonesiaKlebsiella InfectionsKlebsiella pneumoniaePhylogenyWastewaterWhole Genome SequencingAnti-Bacterial AgentsWastewaterIndonesiaKlebsiella quasipneumoniaepublic healthwastewaterwhole-genome sequencing

Identifiers

PMID40375280
PMCPMC12083092

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.