Evidence map›Paper›PMID 40374315›Full record

ArticleAging cell2025

Single-Cell RNA-Seq Reveals Aging-Related Impairment of Microglial Efferocytosis Contributing to Apoptotic Cells Accumulation After Retinal Injury.

Pan Liu, Qi Wang, Shuimiao Wang, Ying Liu, Qiqi Chen, Wanyun Qin, Xinna Liu, Xinqi Ye, Yexuan Jiao, Huiping Yuan and 1 more

Abstract read
In one paragraph

Article in Aging cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Pan LiuDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.ORCID 0000-0002-6999-6550
Qi WangDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Shuimiao WangDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Ying LiuDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.ORCID 0009-0005-1803-5636
Qiqi ChenDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.ORCID 0009-0001-8920-2711
Wanyun QinDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Xinna LiuDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Xinqi YeDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.ORCID 0000-0001-7667-3779
Yexuan JiaoDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.ORCID 0009-0009-2888-1632
Huiping YuanDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Zhengbo ShaoDepartment of Ophthalmology, The Second Affiliated Hospital of Harbin Medical University, Harbin, China.ORCID 0000-0003-4695-8305

Funding

Beijing Medical Award Foundation YXJL-2024-0350-0200China Postdoctoral Science Foundation 2021M701022Heilongjiang Postdoctoral Fund LBH-Z21184Heilongjiang Postdoctoral Fund LBH-Z24025Medical and Health Research Projects of Heilongjiang Province 20240707020161National Natural Science Foundation of China 81500713National Natural Science Foundation of China 81970799Natural Science Foundation of Heilongjiang Province of China PL2024H109Program for Young Talents of Basic Research in Universities of Heilongjiang Province YQJH2024141
6 · The paper itself

Abstract

Aging is associated with increased retinal cell apoptosis, which contributes to decreases in retinal function. Apoptotic retinal cell clearance relies on microglial efferocytosis, but the impact of aging on this process has not been fully elucidated. In this study, we aimed to shed light on this by using single-cell RNA sequencing (sc-RNA-seq) to compare young and aged mouse retinal transcriptional profiles, in which 74,412 retinal cells from young and aged mice were classified into 10 transcriptionally distinct retinal cell types, and differentially expressed genes between young versus aged retinas were mainly associated with cellular senescence and apoptosis. Furthermore, ligand-receptor interactions (e.g., AXL-GAS6, MERTK-GAS6) between microglia and other retinal cells were strengthened in aged, compared to young retinas. Additionally, among microglia, Subcluster 4 was found under partial clustering to be associated with efferocytosis, of which aged microglia had downregulated efferocytosis-associated genes. The impact of aging on microglial efferocytosis was further verified in vitro by doxorubicin (DOX)-induced senescent BV2 microglia, and in vivo by a retinal ischemia/reperfusion (I/R) injury mouse model. In vitro, DOX-treated BV2 microglia had significantly lowered efferocytosis, as well as efferocytosis-related MerTK and Axl protein expression; this was also present in vivo in aged retinas post-I/R injury, with increased co-localization of ionized calcium-binding adapter molecule 1

Indexed as

AgingApoptosisMicrogliaPhagocytosisRetinaRNA-SeqSingle-Cell AnalysisAnimalsCellular SenescenceEfferocytosisMiceMice, Inbred C57BLSingle-Cell Gene Expression Analysisagingapoptosisefferocytosismicrogliaretinasingle‐cell RNA sequencing

Identifiers

PMID40374315
PMCPMC12341814

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.