Evidence map›Paper›PMID 40373065›Full record

ReviewJournal of experimental botany2025

An overview of low-oxygen sensing and flooding responses of tomato.

Niels Eerdekens, Elif Nur Kabak, Batist Geldhof, John Vaughan-Hirsch, César Antonio Chavez, Francesco Mignolli, Maria Laura Vidoz, Bram Van de Poel

Abstract readReview
In one paragraph

Review in Journal of experimental botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Tomato.Journal of experimental botany · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Niels EerdekensDivision of Crop Biotechnics, Department of Biosystems, University of Leuven, Leuven 3001, Belgium.ORCID 0009-0000-3672-6610
Elif Nur KabakDivision of Crop Biotechnics, Department of Biosystems, University of Leuven, Leuven 3001, Belgium.ORCID 0009-0002-0960-6319
Batist GeldhofLeuven Plant Institute, Leuven 3001, Belgium.ORCID 0000-0003-0025-1750
John Vaughan-HirschDivision of Crop Biotechnics, Department of Biosystems, University of Leuven, Leuven 3001, Belgium.ORCID 0000-0001-9596-3878
César Antonio ChavezInstituto de Botánica del Nordeste (IBONE), UNNE-CONICET, Corrientes 3400, Argentina.
Francesco MignolliInstituto de Botánica del Nordeste (IBONE), UNNE-CONICET, Corrientes 3400, Argentina.ORCID 0000-0003-1346-6734
Maria Laura VidozInstituto de Botánica del Nordeste (IBONE), UNNE-CONICET, Corrientes 3400, Argentina.ORCID 0000-0001-8290-8538
Bram Van de PoelDivision of Crop Biotechnics, Department of Biosystems, University of Leuven, Leuven 3001, Belgium.ORCID 0000-0001-5638-2472

Funding

European Research Council 101087134Research Foundation Flanders 12B4R24NResearch Foundation Flanders G023124NResearch Foundation Flanders G0G0219N
6 · The paper itself

Abstract

Tomato (Solanum lycopersicum) is a globally significant and widely consumed vegetable crop. However, the productivity of tomato cultivation is increasingly threatened by flooding events, which are predicted to escalate in both frequency and severity due to climate change. During waterlogging, plants experience acute hypoxic stress, which can be lethal if prolonged. This review examines the mechanisms by which plants sense and signal low-oxygen stress, with a focus on the role of group VII ethylene response factors and the N-degron pathway, including their regulation. A comparative analysis of these low-oxygen signaling pathways between Arabidopsis and tomato reveals considerable conservation across species, although understudied in tomato. Furthermore, this review elucidates how hypoxia triggers various adaptation strategies in tomato. We highlight the physiological, morphological, metabolic, and hormonal responses, including modifications in plant transpiration and photosynthesis, the development of aerenchyma and adventitious roots, the induction of epinasty, and the reprogramming of energy metabolism. The review also provides insights into the hormonal signaling cascades that play a pivotal role in flooding stress responses. We aim to provide an in-depth understanding of how tomato plants deal with flooding-induced hypoxic stress. Additionally, we aim to provide insights that can be leveraged for breeding more flood-tolerant and climate-resilient tomato cultivars.

Indexed as

FloodsOxygenSolanum lycopersicumSignal TransductionStress, PhysiologicalOxygenAdventitious rootsaerenchymaepinastyfloodinghormoneslow-oxygen signalingtomatowaterlogging

Identifiers

PMID40373065
PMCPMC12646155

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.