Evidence map›Paper›PMID 40372046›Full record

ArticleJournal of clinical microbiology2025

Comparison of MALDI-TOF MS instruments and databases for the identification of uncommon yeasts,

Marion Dutkiewicz, Maéva Garros, Julie Bui, Véronique Charlier, Elodie Da Silva, Maryline Lemaire, Sarah Dellière, Anne-Cécile Normand, Renaud Piarroux, Samia Hamane and 2 more

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Rapid identification of Sporothrix brasiliensis by MALDI-TOF MS directly from clinical cultures in an Amazonian epidemic setting.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026
    Article
  2. Article
  3. Evaluation of the VITEKEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
  4. Article
  5. BeyondJournal of fungi (Basel, Switzerland) · 2026
    Article
  6. Article
  7. Urinary tract infection caused by rare yeastFrontiers in immunology · 2026
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Marion DutkiewiczLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.ORCID 0009-0003-7198-1061
Maéva GarrosLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.
Julie BuiLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.
Véronique CharlierLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.
Elodie Da SilvaLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.
Maryline LemaireLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.
Sarah DellièreLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.ORCID 0000-0003-3821-1762
Anne-Cécile NormandLaboratoire de Parasitologie-Mycologie, Hôpital de la Pitié-Salpétrière, APHP, Tunis, Tunis, Tunisia.ORCID 0000-0002-9589-4603
Renaud PiarrouxLaboratoire de Parasitologie-Mycologie, Hôpital de la Pitié-Salpétrière, APHP, Tunis, Tunis, Tunisia.
Samia HamaneLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.
Théo Ghelfenstein-FerreiraLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.ORCID 0000-0002-7784-4434
Alexandre AlanioLaboratoire de Parasitologie-Mycologie, AP-HP, Hôpital Saint-Louis, Paris, Île-de-France, France.ORCID 0000-0001-9726-3082

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of uncommon fungi using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF-MS) remains challenging. Its performance depends on the protein extraction method, instrument, algorithm, and database. This study compared two established mass spectrometers (VITEK MS [bioMérieux] and Microflex [Bruker]) to the new VITEK MS PRIME (bioMérieux) and four databases, including MSI-2, a non-commercial database constructed with spectra acquired with Bruker instruments. Isolates of IMPORTANCE: Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF-MS) is key for fungal identification nowadays. We present here the largest comparison of MALDI-ToF-MS instruments and databases focusing on rare yeasts and molds identification, challenging the existing instruments and both commercial and academic databases. The strains were collected in Saint Louis Hospital (Paris) and identified using bar-code sequencing. We showed that commercial databases are efficient for the identification of the main fungal species tested, whereas the academic database outperforms them for the identification of cryptic species.

Indexed as

AspergillusDatabases, FactualFungiMicrobiological TechniquesMycosesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationYeastsHumansAspergillusfilamentous fungiidentificationMaldi-TOFmoldsMSI2sectionyeasts

Identifiers

PMID40372046
PMCPMC12153315

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.