Evidence map›Paper›PMID 40371947›Full record

ArticleJournal of medical Internet research2025

Scientific Evidence for Clinical Text Summarization Using Large Language Models: Scoping Review.

Lydie Bednarczyk, Daniel Reichenpfader, Christophe Gaudet-Blavignac, Amon Kenna Ette, Jamil Zaghir, Yuanyuan Zheng, Adel Bensahla, Mina Bjelogrlic, Christian Lovis

Abstract readScoping Review
In one paragraph

Article in Journal of medical Internet research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
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  5. Comparison of responses from google and large language models to the top frequently asked questions on lumbar spinal stenosis: an evaluation of accuracy and completeness.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lydie Bednarczyk *Division of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0009-0000-2602-2927
Daniel Reichenpfader *Institute for Patient-centered Digital Health, Bern University of Applied Sciences, Biel, Switzerland.ORCID https://orcid.org/0000-0002-8052-3359
Christophe Gaudet-Blavignac *Division of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0000-0001-6527-5898
Amon Kenna EtteDivision of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0000-0001-7637-0057
Jamil ZaghirDivision of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0000-0002-8209-6098
Yuanyuan ZhengDivision of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0009-0008-7608-2571
Adel BensahlaDivision of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0009-0001-8144-2331
Mina BjelogrlicDivision of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0000-0002-6922-3283
Christian LovisDivision of Medical Information Sciences, University Hospital of Geneva, Geneva, Switzerland.ORCID https://orcid.org/0000-0002-2681-8076

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInformation overload in electronic health records requires effective solutions to alleviate clinicians' administrative tasks. Automatically summarizing clinical text has gained significant attention with the rise of large language models. While individual studies show optimism, a structured overview of the research landscape is lacking.

objectiveThis study aims to present the current state of the art on clinical text summarization using large language models, evaluate the level of evidence in existing research and assess the applicability of performance findings in clinical settings.

methodsThis scoping review complied with the PRISMA-ScR (Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews) guidelines. Literature published between January 1, 2019, and June 18, 2024, was identified from 5 databases: PubMed, Embase, Web of Science, IEEE Xplore, and ACM Digital Library. Studies were excluded if they did not describe transformer-based models, did not focus on clinical text summarization, did not engage with free-text data, were not original research, were nonretrievable, were not peer-reviewed, or were not in English, French, Spanish, or German. Data related to study context and characteristics, scope of research, and evaluation methodologies were systematically collected and analyzed by 3 authors independently.

resultsA total of 30 original studies were included in the analysis. All used observational retrospective designs, mainly using real patient data (n=28, 93%). The research landscape demonstrated a narrow research focus, often centered on summarizing radiology reports (n=17, 57%), primarily involving data from the intensive care unit (n=15, 50%) of US-based institutions (n=19, 73%), in English (n=26, 87%). This focus aligned with the frequent reliance on the open-source Medical Information Mart for Intensive Care dataset (n=15, 50%). Summarization methodologies predominantly involved abstractive approaches (n=17, 57%) on single-document inputs (n=4, 13%) with unstructured data (n=13, 43%), yet reporting on methodological details remained inconsistent across studies. Model selection involved both open-source models (n=26, 87%) and proprietary models (n=7, 23%). Evaluation frameworks were highly heterogeneous. All studies conducted internal validation, but external validation (n=2, 7%), failure analysis (n=6, 20%), and patient safety risks analysis (n=1, 3%) were infrequent, and none reported bias assessment. Most studies used both automated metrics and human evaluation (n=16, 53%), while 10 (33%) used only automated metrics, and 4 (13%) only human evaluation.

conclusionsKey barriers hinder the translation of current research into trustworthy, clinically valid applications. Current research remains exploratory and limited in scope, with many applications yet to be explored. Performance assessments often lack reliability, and clinical impact evaluations are insufficient raising concerns about model utility, safety, fairness, and data privacy. Advancing the field requires more robust evaluation frameworks, a broader research scope, and a stronger focus on real-world applicability.

Indexed as

Electronic Health RecordsNatural Language ProcessingHumansLarge Language Modelsartificial intelligenceelectronic health recordshealth carelarge language modelsnatural language processingscoping reviewsummarizationtranslational research

Identifiers

PMID40371947
PMCPMC12123242

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.